RNA id: TU17321


Basic Information

Item Value
RNA id TU17321
length 440
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00016505
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23864581 ~ 23885258 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttctgttccaGTGATTCCAGATTCGCCCGCATGTGTAGTGGAGACACCGACGCCAAGCCCTGAAGCACAGGTCAAGAAAGAGCCGATTTCTCATGCTGAGGATGCTGTGGGAGccaagaggaggaagaggagaaaggTCATGAAGTCTTCTACATTTATGGATGACGAAGGATGCATAGGTAAGGCAGACTGTTTCAGCAGTCTCGGCAACGCTGAGGCCCTGCGATGCTTTGTAACATAAGAATACCAAAACGCATGCAAAAAGCCTTGACTGATCACGTATGCTTGGCTATGCCAAGATTATGTTGCTTGCTGAaaccagtgtttttattttgacatgtttAATTAGGTGGACAGAATTTCCTTTAACAAAACCCCCAGCAGCCTGCTCCGTTTCCTGCGAGTTAGCGTCACGTTTTGCTccatttatttgcaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17307 lncRNA downstream 30293 23841062 ~ 23844221 (-) False AMCG00016504
TU17281 lncRNA downstream 515700 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 516822 23357461 ~ 23357692 (-) True G13956
TU17278 lncRNA downstream 526802 23347440 ~ 23347712 (-) True G13954
TU17276 lncRNA downstream 527163 23347006 ~ 23347351 (-) True G13952
TU17328 lncRNA upstream 5792 23880959 ~ 23882959 (-) True G13990
TU17356 lncRNA upstream 57842 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 58999 23934166 ~ 23934467 (-) True G14013
TU17360 lncRNA upstream 66151 23941318 ~ 23941538 (-) True G14015
TU17361 lncRNA upstream 66877 23942044 ~ 23943378 (-) True G14016
AMCG00016504 mRNA downstream 11775 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016497 mRNA downstream 1789172 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1853783 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 1922321 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 1952875 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016512 mRNA upstream 18256 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 41776 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 52724 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016513 mRNA upstream 59736 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016511 mRNA upstream 70027 23945194 ~ 23951329 (-) True AMCG00016511
TU17295 other downstream 174259 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 418703 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3738967 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4769133 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7013335 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 435870 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 435870 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 1005981 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1136174 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1137197 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile