RNA id: AMCG00016506


Basic Information

Item Value
RNA id AMCG00016506
length 3512
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00016506
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23938051 ~ 23945024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catacatttaaaaaagattcAACATGCAATATCTCTGATGAGGTTTATACTTTCTTCACTTGATTGATCACTTTGGAGAAAGTTACAATCGTTACTGCTTTACAGATGtttaaaatttaataaatagatacaatATGTGATGATTGGCAGCAGAGGGCCTCGGAGAGACATCCGGGCTCTGTTTCGTGCGGAGCGCTCGGGTCCGGTAGACATGCGGGTTTCACGGCTCATATCCAACATGGCGCTCATGCTCGTATTGAGGAGGGTGCTGGTGGCGGCTGCTGCGGACGGGCTCAAAGCCAGCGCCGCTTATTGCAACCGCAAACCGGAGAGCCTGTGTGGTTTGAAGACCTCGGCTGCAACACGGGGTGAATCGCACCCCAGAGtgagggagctggaggaggccctgAAAATGCCTGCAGTGGATTTCAAGGCACTGTTCAAGGTGCAGGCCCCCAGGAAGGAAGACGACAACATCGTGTTCCAATGCCAATCAGGACGCAGGAGCCTGATCGCCCTGGACACAGCGGTCGCCCTGGGGTACATGCGGGCGCATCACTACGCAGGGGGGTACAGCGAGTGGTCTCAACGCCAGGACAACTGAGGGCAGACTGCAGCTCCCCTGGGGCACAGTGAGGAGCGGGGGCTGTATCCACTGCAGGAGCTGCCACTGTTGACTCTCAATTCTACCAATCAAGAGGGCATCCAGAGTAAATGTCAGAGGACACTCACTAttgatgttgaaataaaaatacctaACTGatctaacaaattaaaaatagaggCCCTTGGTATTACAGATTCTATCTATACAGTATACTGTGTAGTAGAGAGCTTCTCAATTATTGTAAACTAATTATTCTGCAGAGGAGACTAATGCTGCTACTGTTTGATTTTGCATATATGCCTAATTGTGAAATTTGCTGTcaacaaattagctttttttcaCTTCTTTTGGGAAGTTCTTGTATCTCAAAGAATCTCTTCACCCTTTGCCCTCGCAACCATGACATGAGCGACGGGAAGGGTCTTTGCACAGGGTGGAATCTGCCCCACACTTACTGAGGACATCAACAAGTGAAATAAAGCTCAAcgctgtatttaattaaacggGACGATTAGGGGAAAAAGGGAAGACGTGGTGAAATGTCTATTTCGTGTCATGAAAACCGCTTACATATGACCACACCCTGCGGTCAGCTGAGCAAGTTCTTGTACGAGCTAGAGAGTAGAAGTCAGACCTGCAAAGATGATGTGATGAAGAGGAGAAGCTGCAGGAGCATTGTGAAATTGCGAGGTGTGATCTGGTATTGAGCAGCGCTGCGGTCAGTCTATTACAGCAGCTCGTATCTCACCGTGGCTCTACAGATACAGTGAAAGAGGCAATGACACAACTTCCACAAAATGATACTGTGCTAAAGTGCTGTACagtttattaataaatcaatcttaattgttcaCTCCATTTCCCAATACATGTTCATCAGTCTGCTTCTGCCCCAGCACTAGGTACACAGCCTGCTTTTCGCACTGGTGTGCATATCGCAAGCTACGTCACTGTTTCTGTATCTCAgcaactacaataataataataataataataataataataatcatcctATAATACGTTTTATTTATAACCCGCTCTTCTCATATCCAGAGTGAGAAGTCAAGCAGTCAAAACATGCAACAGCAGTAGCAACAAAAGTATGATTTAAAACTTGCAACTAACAGATCattaaaatcttttttaaagGCGAGTTTTACTAATGCCATTGTAACTGGAGAGGCCGCTTCACAGCCTGTGCGAGTCATCCGCTGTGTGGAGCTGCGGCGGCTGCtggagaaatacatttacatcattgcttacaaataaaaacctaatcgCACACGAACTGCACCTcaccataaaaacacaaaagcagaagCACTGTTCAtcctgtttatttgaaagtgcaaatctttgtaaatcaGTTAAGGTCACATTTGCGCTTCGCAGTTGATGCCACTACAGCATCAGTCCTGCCTGTGAGGATTAGTATGGTAATGgtgttaatatatattgctCACCAAACAGCTCTGGCTTTGCCTGTGTTATACCCGCGCTGTCCGTGCCGGTGGATAAGCAGCTCAATTAAGTCTCATGAATTGTGATCAGGTTGCAGCTCTGATTCAGCTCTGATCCGTTTAGTacacaattgagatcaagaCCAAAATCGGATCCCGGATCCCGTTAGTTTTGTGAAAGTTGCGTTATTGACTGACTACCTGTAGAGCCGCGGTCAGATACGAGCTGCTCGCTGCTCAATACCGGGTCACACCTCGCATCAGCGCCGCCGCATCTGGACCTGCTCCAGTGCCATTTCATGATCCGGAGTGAGCCCGGATCCGATTctgttttctgatcctgttagtacgAGGACTGTAGCCTACTGTGTTGGTTATTCATATGCAACAGGAGtttcagcaaaaataatgtaattataattgtatttccttatatctttaatattagaATAGCTGAAACATTAGTTTAAACGGCACAAACGAAATACATATGTTCGGGCGATTATGTTGTTGCGGGGGGCTGATTGACGTTACTCGtcgaaaataaatacattttaatatcttcaaaaccaaagcagcacaaacgtTTATTTCAACGGCATTAAACGAAATATATGCAATTTATCGTTTGTGCTGTAAGGGGGGGGCAACTTAACAGAGCTAGCTGCAGGTTATCaagattaaacattaatatataactggaatgtctttgtatttttcactcAATAAAATCTACCAatgaagattatatatttttaaaactgagcatgttttgtgattttctCTTTAAATTTGCATATCTATTGGCCTTTctgggtaaaaaaacaaaaaacaaaaaaaaccttggaATTGAATACTTGTTAATTGTCATTTGACAAGGTTGTTTGTGGAGAAGAGTAGCAGTAGCTTTATCAGAGACCAAACCACAGTGTAACAAGGATCAGGTGTTTTTGTGGGGGGTAGGGTGCAGCCTGTTTCTAGTTTCAATTGCATTGGATTTTCAGTGCCAGAAACCTGGTGTTTCCACATGGATAGCATAACAAAACTGGCCCAAATATTTCAGTAGGGGTTTAGCTTCCCATTATTATTgaagagggggggaaaataACTTTCATAAATACATTGGCTGTAACCCTCGCTGGCAGGCAGGTTGCAGACCAGGTTTGGATAAAGGCAATAGCTCGGTGCAGCTTCAGTTTACAAACAAGTTTGCTAATCCGGTCTGCAGACATCCAAGAGTTGGGTATAGCTCCTGTTTGCTTGCTTGAACACAAAAGGTATGTGATGATCTGCTATGATCGGAATGTGATGTCTGCTTCAGAAAATAGTGAACCAAGCTTGTTCTGTCACACCTCACACCAATATCAGATGATTGATTGTGACAGATTAGATACTTTCAGATTCCAACAAGTACATGGTCTGCCCTCCCAATCTGTATGACCATG

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17327 lncRNA upstream 55105 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA upstream 55105 23880960 ~ 23882946 (+) False AMCG00016502
TU17308 lncRNA upstream 72251 23862215 ~ 23865800 (+) True G13979
TU17309 lncRNA upstream 72251 23862215 ~ 23865800 (+) False G13979
TU17277 lncRNA upstream 590339 23347427 ~ 23347712 (+) True G13953
TU17414 lncRNA downstream 134993 24080017 ~ 24103017 (+) True G14057
TU17505 lncRNA downstream 372776 24317800 ~ 24321319 (+) True G14132
TU17511 lncRNA downstream 391946 24336970 ~ 24338848 (+) True G14136
TU17494 lncRNA downstream 425302 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA downstream 425302 24370326 ~ 24375827 (+) False G14127
AMCG00016507 mRNA upstream 3601 23925791 ~ 23934450 (+) True AMCG00016507
AMCG00016509 mRNA upstream 24618 23904004 ~ 23913433 (+) True AMCG00016509
AMCG00016502 mRNA upstream 56885 23866267 ~ 23881166 (+) False AMCG00016502
AMCG00016503 mRNA upstream 122541 23768136 ~ 23815510 (+) True AMCG00016503
AMCG00016500 mRNA upstream 186919 23728848 ~ 23751132 (+) True AMCG00016500
AMCG00016508 mRNA downstream 14280 23959304 ~ 23972841 (+) True AMCG00016508
AMCG00016516 mRNA downstream 77390 24022414 ~ 24029956 (+) True AMCG00016516
AMCG00016515 mRNA downstream 128698 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016520 mRNA downstream 144806 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016519 mRNA downstream 159881 24104905 ~ 24118373 (+) True AMCG00016519
TU16114 other upstream 6816119 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7452048 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7452048 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7452903 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 9499445 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 134993 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 589994 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 1062938 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1188174 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1205459 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile