RNA id: AMCG00016508


Basic Information

Item Value
RNA id AMCG00016508
length 3659
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00016508
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23959304 ~ 23972841 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTCCCTGATGTATCCAGTCACCCCCCATGGCCGTGTTGAACGTAGTAGGCTGGTCTTGGAATGGGTCAGACCCATTCCTCGGCCCGGTAGCCAACCGCACAGTGGAGCCGGACAGCTACCACAACTACTATGCCATGCTGTACTCGCTGCTGATCTTCGCCATCGTGTTCGGGAACGTGTTGGTGTGCCTGGCCGTGCTGCGTGAGAGGAGCCTGCAGACAACCACCAACTACCTGGTGGTCAGCCTGGCTGTGGCCGACCTGCTGGTGGCCTCGCTAGTCATGCCCTGGGTGGTCTACCTAGAGGTCGTTGGCGGAGACTGGGCCTTCAGCCGAGTGTACTGTGACATATTCGTGACACTGGACGTCATGATGTGCACAGCAAGCATCTTAAACCTCTGTGCCATCAGCATCGACAGgTACACTGCAGTTGTGATGCCGGTTTTATACAACACCACTCACAGCTCCCAGAGGAGGGTCTCTGTCATGATTGCTGCTGTCTGGATTCTTGCCTTTGCCGTCTCTTGCCCCCTCCTCTTTGGCTTTAACACCACAGACGATCCCAGTATCTGTTCCATCTCCAACCCCGAGTTTGTCATCTACTCCTCAGTGGTATCCTTCTACCTGCCCTTTGTGGTGACCCTCCTTGTCTACATCCGGATCTACGTGTTTCTGCGGAAAAGGCGGAAGCGCATCACTTTCAGACAGGCCAGCAGAAAGGCCGAGCCAGGGAGCTTCCCTCAGTCGGGGgaGACGTGTCTGCACACCGAGGGAGCAAAAGAGTCCTTATCCAAAGAAAAAGTGGATCTCTCTCCCATTCAAATCAATGTGGAGAGTGGGGAGGTGCCTGTGCAGACCGCCCCCACACTGCTGACCTCGTGTCTAAGGCGCAAGCCAAAGACAGCTCCATTTGAGAACAAGCTCCTGCCCCCTGCGGACCTGCACAACTACTGCAGCATTAGCCAGGCTTCCTTCGCCAGAACAGAGAATGAGCCAGAGGAGGGCGAGGAGGACACCAGGGATGGCCCAGGGCCGCGGGCCAAGAGAACCTCCGAGGTCAAGGAGCTGTCTAATGGCAGGACACACATCGCTCTGTGCCCAGCGCCTCGCCGCCGCAACATGCAGCTCCGTGAGCGGAAAGCCACACAGATGCTGGCCATCGTCCTGGGTGTCTTCCTCATCTGCTGGCTGCCCTTCTTTGTGACCCACATCCTAAACACTCACTGCAAGTCCTGCTATGTGCCTCCGGAGGTGTACAGTGCCACCACATGGCTGGGGTATGTAAACAGTGCTCTGAACCCTGTAATATACACCACCTTCAACATCGAGTTCAGAAGAGCCTTCATCAAGATCCTAACCTGCTAATAGACATTGCACTGTTATAGATAGCCCCCTGGCTGCAGTTACAATCATGCACAAATTACAGCAAGCATGCCAAGATGCCATTTCTAGGAAAACTACATATTGTATGGGTCTTCAAATCTAAAATCACTGAGCTCCAATGAGACAGGAAGGGACTTGACTTTTACGttcaaagaaaacacagaggACTTTCGAAATATGAACTGCCTTTATTGTCAGGATGTTACTGCTACACCCTTGCAGTTTTTTTTGATTGCACCATCGGaagttaaaaaagaagaaaaaaaagaactgtactgtaaagtacagtaaaatgactgacaagattctttgtttttgttgttgttaaaaaaaggatcagtattatttttaggCTGAGTttagaatgtgtgtgtatatatataaatagctaTCTTCCTGCAGCATATCTCATTACAGTGCTAAACATTAACACCAGTCTTTCCAGAGGTatcccactgctgacaccaTATAATCAGGATGGAGGATTCaagtctgttttcctttttcaaagaAAGGGATTTCTATCGACTGGTGAAACAGAACGTAATCATGCAGTGCTGTGGAAAGTGCCACAGTTATAAGAAGGTATTCCTCCATGATTAAAGTATTCCCTTTGAGGCTGCACTGCTCCATGGCACCTCAAAACGCAGTAGATCACCTGAACCTATTCAAGAGCAGCAGTGTTAAACAACCTTTCTCTGTAACACCCAAAAAGTATCCTCACATTTCCTTATCACAAACCAGGCGTGAACGAACAGtggccgtgtgtgtgtgtgtgtgtgtgtgtttttgtttgtttgtttggtttagcTTACAGCCTGGACACATATGTACCCAACAGAGGCGCTGACCACGCAGTAAATTTTGGTAAAGGCTTAAACTAATCGATGGAAATACAATGTAGCCTTGCTTAGCTTGCTTGAAACCACAGCCTGCTTCGGCCACAAGTGCTGCGGTTGATGGCGAGTGTCTTATGGAGCACTGTGAGTCTCGCCGACAGACGCCTCCTATAACCTGTAGGGCCAGCCACACAGAACAGCCATTTTATCACCTTCCATGCTAAGCAATCTTTCTCCATGGTGACCGTGACTCCTGCTGCAGCCGGCTGCCATCAATCTTTAATGGGGGCCACTCTATCTTCTTTAAAGACATCAGACCTGGGAAGTGTGCAAGGTTAATGCAGCTGGAGACTGACAGCTGCTCAGTGTTGGCTCTCGCCGATAGGCAAACACACCACGCAGCATGAATGTCAGTGGGGGGGTCTTGCAGCCTGAATTGAGACAATCCATCCAGGATTTAATTGGCCATTACTTGGCTCTTTTCTGTGATTGAATTATACGGCCAGATTATTGCAAACAATTGCTGAAACAGACACCAAGAGTCTGGTGTCACCTCTAAACAGTGCATTTAGTATTTTATAGCATGTGCttggttcatttatttatttgtttatttatttatgtcccATAggttatgtgtgtatttatgtatatgtttgtttgttttttaaaggagaaacacaattttgtattgttgttattagtagtagtagtagtatatggACAATTTCttgtgatattattttattttgcacggAGGcaggtaaaatacaaataatcttgGTGgagcaaaggaagaaaaaatagaatGTGGTATCAGTTtatgataataattaatcaattaaccaatAAAATGGTATAATACATATTCTATAACTCTTCTATGTATCTGATATGAATTAAATGTCCActtctggggaaaaaaactccTCTTGTCCCACATTAAACCCTTAATCAACTGTAATCATTATGAATGGCTCTCTCATGTAATACAATCAACCAACCAGACAGCAATTGAACTACTTCTCATAGATCGTGTTACAATGGGGCATAATGAAAGAACAGTGAAAGAGTATTTTGACATGTACAATCCAGTAAtcgagtgtgtttgtttgttttgtgttggtgtTTAAAGTGACGTGATGCTCACTCACAGTGGAATAAAACCTttccaaaagcaaaaacataaatgctacacatatttaaaaaaaactaaaatcaactTAAAACTATCCACCACGGCTAAGcaaaggtcaaagttcaaacCCCGCTATTCACTGCAGAAAGCAAAGGGGGCTTTGCAAAGGCGACAAATGAGCAGCAGTTGGGTGCAGACTGTGACCAGAGGATGCATCTCTCAGCGTTTATCTCCTGCAGGTGATGAGAGAGCAGCAGCCCATGGTTTGTCTGAGGCAGTTCTGTGGTGAGAAGTGCT

Function

GO:

id name namespace
GO:0007195 adenylate cyclase-inhibiting dopamine receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG:

id description
K04146 DRD3; dopamine receptor D3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17335 lncRNA upstream 14542 23943274 ~ 23944762 (+) False AMCG00016506
TU17327 lncRNA upstream 76358 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA upstream 76358 23880960 ~ 23882946 (+) False AMCG00016502
TU17308 lncRNA upstream 93504 23862215 ~ 23865800 (+) True G13979
TU17309 lncRNA upstream 93504 23862215 ~ 23865800 (+) False G13979
TU17414 lncRNA downstream 107176 24080017 ~ 24103017 (+) True G14057
TU17505 lncRNA downstream 344959 24317800 ~ 24321319 (+) True G14132
TU17511 lncRNA downstream 364129 24336970 ~ 24338848 (+) True G14136
TU17494 lncRNA downstream 397485 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA downstream 397485 24370326 ~ 24375827 (+) False G14127
AMCG00016506 mRNA upstream 14280 23938051 ~ 23945024 (+) True AMCG00016506
AMCG00016507 mRNA upstream 24854 23925791 ~ 23934450 (+) True AMCG00016507
AMCG00016509 mRNA upstream 45871 23904004 ~ 23913433 (+) True AMCG00016509
AMCG00016502 mRNA upstream 78138 23866267 ~ 23881166 (+) False AMCG00016502
AMCG00016503 mRNA upstream 143794 23768136 ~ 23815510 (+) True AMCG00016503
AMCG00016516 mRNA downstream 49573 24022414 ~ 24029956 (+) True AMCG00016516
AMCG00016515 mRNA downstream 100881 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016520 mRNA downstream 116989 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016519 mRNA downstream 132064 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016529 mRNA downstream 352109 24324950 ~ 24336827 (+) True AMCG00016529
TU16114 other upstream 6837372 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7473301 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7473301 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7474156 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 9520698 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 107176 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 562177 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 1035121 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1160357 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1177642 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04265169_04284528.mRNA True 1524 mRNA 0.50 8 CI01000018 4265169 ~ 4284620 (+)