RNA id: AMCG00016510


Basic Information

Item Value
RNA id AMCG00016510
length 2537
RNA type mRNA
GC content 0.52
exon number 18
gene id AMCG00016510
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23916943 ~ 23925716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGAACTACAACTCCCAATGCGCATGTCACTGCGGCGCTGCTAGGATACAGCATTCCTCCGAGGAAAAATTGGAGATGTGTTCAGCTATTTCACACAGTTTCTCTCCCCGCAAAGAGCACCCTCTGCGTGGATAAACACCGATTAAAACCGCAAAGAGCACCGTCGCAAACAAGCCAGGGGCATTCTGTACACAAGGGTTGATCTGTCACTCACACTTCAGGGAGTCAGTCCCGGGATGTGACCCTGTGCTGCGACCATGGGCACAGATGGGCTGTACAAACTGGACGATGGAGACACCTTTCCGACCAATTGCTTTCCAGTCAGGTCCTTTTTCCGGCAAAGCGAAGAGGGCGGAGGGCACTGGCTGGTGGTACACAGAGTCGTGGACCATGAGAGGTACAGGGTCACGCAGCCCGAGCGTCCGGCCGGCTCACAGTGCCGTGAGCAAGGCCGGTCTGTCCCATCTCGCACCGGACAGCGACAGGGAAAGAGCAAACGAGGCTCTGTGAACAATGTCTTAGATGGGAATTATTTAATGAAAGTGCATTGTGTGGAGAAGCCGTCCGAGCTGTGCTCCGTGGATGTCAGCGACAGAAACCTGCACTTGGCCAAGGAGGAGGATTTTGAAGCGTTCAACAATGTTGCTTATATGAACGCATCCAGCAACCTGCTTACCTTAGAGCCCTTCAGAAAATTTCCCATAATCAGAGAGCTGGAGTTAGCGGGGAATGGCCTGCACAGGCTGCAAATCAATGACGGAGACTTTCCACATCTGGAGGTGCTGGACCTCTCTTACAACAGCCTGTCCAGCCAGGAAGTCCTGTCCCTGGGTCTGCTGCCCTGCCTCAGAGTCCTGCACCTCACTGGTAACGGACTGCAGGCACTGCCACTCAACATGGCCCAGCCATACCAGGCCCCCACACAGCTGGCGTCCAACCACGGCCTCCGGTTCTACAGCTTGGAGATCTTGATATTAGATGACAACAAACTCTCTTCTCCGGGGATATTCACCAGCCTGGCTAATCTGAAAAGGCTGAAGCATCTAAACCTGGACCGCAACGGCATCACCCAGGTGCCTTACTTGCATCAGATCGGGGATTCTGCACAGGATGCCCAGCTTCCAGATTTGAACATGCAGTTTGGGGTCAAAGGGCACGATGAGGCTGTGGGAGGCGGGACATCCCCCAGCATGGGTCTGGACAGAGGTGGTGGCACATGCTCAGCAACTGCAGCATCAGAAGGGGCAACTGTGGAGAGAACAGGCTACTCTCAATGCAAAAAGGAGTGTAGTGTTCAGGAGGAGCCATGGCTGACTGCTGGTGTCCCTCGCACTGAGACCCAGAGGGAAGACCCTGCAGAATTCCAGTTACCCCTTCCGGAGCTTCAGTTTCTAAGCCTGGCTGACAATAAGATATCAGAGGAAGAGGCCCTGCTGGCAGTGGCTCTGTTCCCCTCCCTCAGCGAGCTGGTGATTCACAGTAACCCTCTCACCACACAAAAGAGTGGCGACCCTCCGTTGCTAACCGGTTTCCTCCAGAACAGACTGGGcattaaaatacagagaaaaaagaCAGTGGGACCAGCGAAGCCACCTCTCGTGCTTCCAGTGAACCCCAAACGAAAGGTGAAAACCAGAATCCCAAAGATCCCTAAGAAGTCCCTGTGCTTGGAGGATTCTCTCGGCTCTTTGCCCTTAAGCGAGAGACCAGCGGACACCTGGAAGAGCCACATGCAGTACAAACCTCTGCCACCAATCCAGTCATTGTCCCAGGTTAACAGTGAAGAGAGTCAGCAGGCAGAAGCTGTAGCCTGGGTTCAGGGTGAGGCCGTCCACGAAGAGGCAACCAGACACGAACCAGAGGAACACGAAAAGGAAGACAATGGGGCTGCATTCTTTATGACACAGGTGAATGAACCAGAATCAGACGCTGGCTGGCATACAAGTCTGCAAGAGAGTGAGGAAACTCACAGAAAAACTCAAAGACCGAAGGAAGATTCAGTTCCAGATAAATTCAGAGGATATGAAATACTACTGGATGCAAAGCCTGATCCGGATATGATTGAGCCTACTGGAATTCAGCAGAACGTCAGAGCTCTGGAATACACACTTCAGAACCTCCTTGTGTTCAGGGATTCCAGGGCTAGACTTGACTGTCCCCAGAAACCGTACGTGCAAAAGGAGAAGAagCTAGGGAAACTGCCACCCCCAAAACCGAGAAAATCGAAAGGGGACAAAGTGGCAGAATTCCTTGTCAAGATTAAGGACACGAAACCAATCAGTGAAGCCCCGTTAGCTAATGTTCTTCAGAACAAAGAGGTGAGCAGGACAGAATATGAGGAGGCTCGTGCCCTGCTGAGGGAAATGAAGAGGCAGTACAGGGTTGCCCAGAGCAAGGTGATGGACCAAGCAGCCCAGATTGAGAGAGACACGCTGGGTGATCTTGAGGAGAAAAGAGGAGGAAAATAACACtcttgaaataaatcaaacctaGACctggtgttatttttttttcttcatctaaTGATCTTACATGTG

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17328 lncRNA downstream 33984 23880959 ~ 23882959 (-) True G13990
TU17321 lncRNA downstream 41776 23874514 ~ 23875167 (-) True AMCG00016505
TU17307 lncRNA downstream 72722 23841062 ~ 23844221 (-) False AMCG00016504
TU17281 lncRNA downstream 558129 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 559251 23357461 ~ 23357692 (-) True G13956
TU17356 lncRNA upstream 7293 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 8450 23934166 ~ 23934467 (-) True G14013
TU17360 lncRNA upstream 15602 23941318 ~ 23941538 (-) True G14015
TU17361 lncRNA upstream 16328 23942044 ~ 23943378 (-) True G14016
TU17453 lncRNA upstream 221683 24147399 ~ 24147677 (-) True G14092
AMCG00016512 mRNA downstream 14138 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016505 mRNA downstream 31685 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016504 mRNA downstream 54204 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016497 mRNA downstream 1831601 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1896212 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016514 mRNA upstream 2175 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016513 mRNA upstream 9187 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016511 mRNA upstream 19478 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016518 mRNA upstream 82172 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016517 mRNA upstream 103674 24029390 ~ 24039800 (-) True AMCG00016517
TU17295 other downstream 216688 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 461132 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3781396 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4811562 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7055764 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 385321 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 385321 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 955432 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1085625 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1086648 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile