RNA id: AMCG00016512


Basic Information

Item Value
RNA id AMCG00016512
length 2404
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00016512
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23893423 ~ 23902805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aataataataataataataataataatcaagcgTCAAGACTGGGATCATTAAGGTAAACGGCAGTTCTGATCTACCCCTGTAGGGGGCATTCGTCTTCAATAGAACTCTACAGTGGGTCTGTGATTTGATGCGGAGTTTCTCACTGGTTTTGCGGTATTTTGCTGTCGCCTTTCAGCCCTTCAGGATATTTGTAGTCATTGGCAACGTTTAtagctgtatttgtatttatttctgggaGGAATCGTCTCAGACATGAAGCACTTTTTCATCTCTGTGAGTCTGGCGTTGTACAATATTCTTGATGCAGAAGCAGTCAGGGCCAACAAAATCTCTGGCACATTTtgcactttcaaagaaaagagaTACAATCCAGGAGACACCTGGCATCCCTATCTGGAGCCTTATGGATTGATGTTCTGCATGCGTTGCACATGCACTGAGACCGGCCATGTGAACTGTAACACTATAAAGTGCCCCGTCCTCAGATGTGAGAATCCAGTGACTGACTCTCAGCAGTGCTGCCCCAGGTGTGCAGTGGAGCCCAGGAGCCCAGCAGGCCTGAGGGCCCCTGTGAAATCCTGCCAGTACAACGGGAGCCTCTACCAGCCTGGCGAGACCTTCTCCAATGACGAGCTCTTTCCTTCCCGCCAGCCCAATCAGTGTGTGATGTGTAGCTGCTCGaACGGGAACATCTTCTGTGCTCTGAAGACTTGTTTGAAGCTTACCTGCACATCTCCTGTGTTCCTACCAGACACCTGCTGTCCAGTGTGCACAGATGCTGCTGTGAATGCCAACTCGGCCTCCACTGAGGATGGCGGGCAGCAGCTTAACCGAGGCGTAAGGCATTCACAGGACCAGTGTTCCCAGGAGCTTGTGAAAGGCAGAGCATTGCGTGCCACACCGGCCACAGCGAGGAGCGCAGCCCGGGGCATCAACCTGCAGGGCTTCAGGCACAGAGGGGCCGCAGGGACCACAGTGAAGATCGTGCTGCAGAAGAAACACAAGAGAGCCTGTGTGTACAATGGGAAGACCTACTCCCACGGCGATGTGTGGCACCCAGTGCTGGGCAGGGTGCTGGAATGTATCCTGTGCACGTGCAGGGATGGTGTGCAGGAGTGCCAGCGCATCACCTGTCCCAGCCAGTACCCCTGCCAGCACCCCAAGAAGACCGAAGGACAGTGCTGCAAAAGATGCCCAGAACTGAATGAAGAATCCAGTAGCACCCAGTGCCACCAGGGAAAGGGCAACAGCGACCTCGTGCTGTATAAAGTGGAGTCTGGCAGCGACACCGCCGTCAGGAAAATCGCTGTAGACAGAGAAGGGGCAGTGGAGATTGAGGTTCATGTGTGGAAAACAGTAGAAGGGGTGCTGCACTTAATGGACACAGAGAAGCTGCCCAGGAAAGAAGTCACAGAGCACCCGGGGAACTTCGTCTTCCTGACCCGACTGGACGAGGagaaCTGGAGAAAGTTCAAGGAGACAGAAGGCCAAAGAACGGGATTCACAGAAAGCAGAACATGTGATGGCGGCATTATGGAGGTGGTGAAGTTTTTGAATCCAGAGCAGTCACACAGTCTGTGTGCCTCCTAAATCTCTTCAAGGGACTGCACCCCTGGTAACTTGAGAAGCACTTCCTGGAGTCAATCAGCTGGTCAGAAACCTCTGTGCAGCAGAGACCTGTTGCACATCGACCCTTTATTTCATGAGGCAgtctttataaaaacaaaacacagcatctTTAAGCACTTTAGTAAAGTATGAGGAGatgctgaataaaaaaatgtagacaTCAAAATTATATGAAgatttacttttcttctttttctttttttattgttcatattattaatattattatttgttgctTGGAACTCCAGAAGGATAATATGTAAAGTGTTGTACCGAGAGTCCATTACAGATGTAAGATGCGCTATTTCAATCCCTCAGACCCTCCCTGTGTAGTCGGTGTGGATTTTTAAGATCAGAGCCTCTTTcggacaaaaacaaatgcttgtcAGGTGAAGTGATAGTTTATTCTCTGCGTTCGTAGGctgttgtgattttaatggtGTGTTAAGATACTGTCCAACTGGCAGTGAGATGCCTCATATATAATGGAGAATAGAAAGAGCACGGCTAAGATGTTAGGTTTCCTGGAGCCAGGAAATGTAAGACTAAGGAAACTCTGACCAGAATATGGTTAACAGTCTCCCAGCAGGACACTTAACAGATAGAGAGCTGATAGAGAGGTCGTAATATGTACCTTCTGCTTCCCTTTCATGAACtccaaatgcattaaaacaatgacATGATGTGCACAAGCCATATATATATNNNNNNNNNNatatatatatatatcatggaTTGAGGACCATTATTGTGAATACAAAACAGTGTAATACT

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process

KEGG:

id description
K17280 CHRDL2; chordin-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17328 lncRNA downstream 10464 23880959 ~ 23882959 (-) True G13990
TU17321 lncRNA downstream 18256 23874514 ~ 23875167 (-) True AMCG00016505
TU17307 lncRNA downstream 49202 23841062 ~ 23844221 (-) False AMCG00016504
TU17281 lncRNA downstream 534609 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 535731 23357461 ~ 23357692 (-) True G13956
TU17356 lncRNA upstream 30204 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 31361 23934166 ~ 23934467 (-) True G14013
TU17360 lncRNA upstream 38513 23941318 ~ 23941538 (-) True G14015
TU17361 lncRNA upstream 39239 23942044 ~ 23943378 (-) True G14016
TU17453 lncRNA upstream 244594 24147399 ~ 24147677 (-) True G14092
AMCG00016505 mRNA downstream 8165 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016504 mRNA downstream 30684 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016497 mRNA downstream 1808081 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1872692 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 1941230 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016510 mRNA upstream 14138 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 25086 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016513 mRNA upstream 32098 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016511 mRNA upstream 42389 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016518 mRNA upstream 105083 24007888 ~ 24020791 (-) True AMCG00016518
TU17295 other downstream 193168 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 437612 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3757876 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4788042 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7032244 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 408232 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 408232 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 978343 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1108536 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1109559 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile