RNA id: AMCG00016514


Basic Information

Item Value
RNA id AMCG00016514
length 752
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00016514
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23927891 ~ 23931580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTGTGACGGCGTTTAGATAGAGACCCGACAGGGATGTTGGGTGACATTCAGAGTGGGATCCGGATTGAAACGTTACTGCTTGCAAAACTTTAATGGCCAGACAAGTTCGTATCGGGTATTAAAATCACCAGCACGATTCAGCATGATGCTCAACACGATCAGCCGCACTCGCGGTGCCTTGGGGACCCTTTTAGGCCAGCTGAGGAGCAGCCCCGGGGGGATAGGGGCACACATCGCCCGGAGACGGCTGTGCACTAAGCCGCAAGAGACCCAGCCTCAGCCGGCGACTCCGGTCCAGAGTCATGCAGAGGCCGTTCGTCCTGCCTACAAGATGCCTGGGCACAGACCTACAGAGAATGACAAGAGGGTCCTAATCTGGTCTGGCCGCTTCAAGAGCAGGGATCAGATTCCAGAGTTTGTGTCGCATGAAATGATTGACGCTTCGAGGAACAAGCTTCGAGTGAAGGCCTGCTACATCATGATCGGCCTGACAGTGCTGTCCTGTGTGGCCATGGTCATACTAGGTAAACAGGCTGCTGGTCGGAACGAGTCCCTGCTAGGCTGGAACATGGAAAGGAAAGCGCGCTGgagagaggaggcagggagggagagtaCAGTGGCAGCAGAAAAGGCTCCATAGAACATCACAGCCAGCAGACAGGAGGGAAGAAATTGGGGGCAGCAACACCTTTAATACAATCCCGATGTAGCtactacaccccccccccagtgtTCATTTATCTTGATGC

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17328 lncRNA downstream 44932 23880959 ~ 23882959 (-) True G13990
TU17321 lncRNA downstream 52724 23874514 ~ 23875167 (-) True AMCG00016505
TU17307 lncRNA downstream 83670 23841062 ~ 23844221 (-) False AMCG00016504
TU17281 lncRNA downstream 569077 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 570199 23357461 ~ 23357692 (-) True G13956
TU17356 lncRNA upstream 1429 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 2586 23934166 ~ 23934467 (-) True G14013
TU17360 lncRNA upstream 9738 23941318 ~ 23941538 (-) True G14015
TU17361 lncRNA upstream 10464 23942044 ~ 23943378 (-) True G14016
TU17453 lncRNA upstream 215819 24147399 ~ 24147677 (-) True G14092
AMCG00016510 mRNA downstream 2175 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016512 mRNA downstream 25086 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016505 mRNA downstream 42633 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016504 mRNA downstream 65152 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016497 mRNA downstream 1842549 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016513 mRNA upstream 3323 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016511 mRNA upstream 13614 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016518 mRNA upstream 76308 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016517 mRNA upstream 97810 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016523 mRNA upstream 116240 24047820 ~ 24062602 (-) True AMCG00016523
TU17295 other downstream 227636 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 472080 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3792344 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4822510 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7066712 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 379457 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 379457 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 949568 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1079761 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1080784 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile