RNA id: AMCG00016516


Basic Information

Item Value
RNA id AMCG00016516
length 3414
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00016516
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24022414 ~ 24029956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAATGACGATATTGATCACTGGATGAAGAGGGTCGAAGCTGCCTCTGAGTTTGCGGTGTCTGAAGTGTTTTCACTCAAGAAACCGTCTgccaggtcaaaggtcaaaggtcCTGCTATGGCGCTGGAGAGCGTTGACCAGTTATACGACCACGATGAAGCCTATAGCGAAGCCCAGGCGTTGCTGAGCGACTGGATGAGCACCAAGCTGAGACTGGAGCTGGAGGCTGGGGAGGATGACAGCCCCCTGGGGGACTACCTGTACGCCCACTTGGAGCAGGAGGCCGAGAGCACAGCAGTGCACAGTTTCCTGCAGGAGCTCATGGAGAAGGAAGTggtggactctgggatagtggAGGACCTCAGgatggacacagagagagaccggAGGCGGCAGAAAGACCCAAGAGTCACCATGGAGATCAGACACCAGCAGGTGCGGGAGAGCCGAGCGAGGCGGGAGCAGCAGCGGGAGCAGCAGCGCCGGGAGCTGGCGGTGCGCAGGGAGGCAGAGGCTGAGGCGCGGCGGAGGGTGCAGGAGCAGGAGAGGGTCCGGCGGCTGCAGGAGCGCAAGCAGGaagagctgctgcagagggagGTGGTGCAGCTGCGCAAGGAAATGGGCGAGAAGCGGAGCATCGCACAGCTGGCCAGGCAGATggagagagagagactggacaGGAAGAGATCTGCAGGAAGGACCACACAGGATCTGCCCACTCCTCTTCCCCTGTCCCCACAGGCCGCACAGATGCAGCCGGAGCAGCCGGATGCCGAGAGACTGCGCAGGCGGCAGGAGGCGGAGGCCAGGGCTCACATGCTAAACCTGAGGCATCACTTCTCCGGCTGGTACTCCGTGGTGCTGGAGGGGCGGGTGCGGCTGGGCAAGGCGGCGGCGCTGTGTGATTGGAGGAGCCAGCTGCGGGCGTGGCGGGCGGCGTGGCGTGTGGCGGTGGAGAGCGATGGGCGACGGGTGCTGCGGCAGTGCCTGGGCGCGTGGTGCAGCTGGAGCCGGGCCCAGAGGGAGGGCCGGGAGCTCCGTGCACAGCAGGATGAGACACGACGCAAAATGGCTGCCCTGCTGGCAGCCGCATCCTCAGGGAGACTGGCTGACCATGCCACCACAGACCCCCCAGAGCAGAGCCAGAGCCCAACACAGCCCaggCAGGCCATGCAGCCAGCTGTAGAGTGTGCGGACTCAGATCTGGGCCGCACCCCCTCTGCCCCAGTGCCCGGCTCAGCGGGGTCTCAGTGGGTGTCGGAACCTCGGGAGGCCTGGCAGGTCACCCGGCGGCACGCAGCCCTCAGTGCAAAGGAGCTGAGCAGAGCCGGAGAGCAGCCTGACAGCAGCCAGCAGGGGAGGGGCAGCGGGAGGGGGAGGTTAGTGCTGGGCGGACGATTTGAGAACCGACACGCCTTCCAGCAGGAGTTGCTGGAGCAGCAAAGGAGGCAGCTGCGGGAGCAGGAGGAGACCAtccaggagctgcaggagaaCCAGCGTCTGATGATGCTGAGGCAGGAGGCAGAGAGGGTCGCCATGGCAACACGGAAAGCACAGCCCGCCCCCCAGAGCAGAGCCGCTGCCGCCGCCACACCCCCCCAGGGCAGCTCTGCTGTGGGGAAACAAATATCATGCTCCACCCTGCCTGCCTCCAGAGGAGTCCAGGGCCCCTCCGCCCCTCACCACCCCACAGTGAGAGCCATGGAAGAGCGCGCCAAGCAGCGAGCAGAACGGAGAAGAGAGATTGAGAAGATGAAGAGAAGGAAGGAAGAGGACAAACTGGTGCAACTGCAGGCGGCAGAGGAGGAGAGGCGCAGACAGGAGGAGGCTGAGAGACAGGCTGCCGCTGAGGCCAAGCGCGAGGAGAGGAGGCTGAAAAGACAGAAGGAGCAGGAGAGACAGGGGAGGCTGGAGAGGGAGCGGCAGCAGCAGGTCAGGGCCTCTGAACACTACCAGCACAGCCTCCTGCTGAATAAGGGCCTGGTGCCGTGGAAGCAACTACTGGACCAAAGCAGGAAGAACACTCAGCTGGCTGAAGTCCATCATAGGCACTCCCTCCTGAGAAAGTGCCTCTGCTCCTGGCTGCAGACGGCAGGCGAGTCCCTGGCTGCGAAAGAGGCCTTGGCTGCAGAACTGCATCGGCGCATTTTGCTGAGGAGGAGTCTGCACAGCTGGCTGAAGTGCAAGGATTATATAGCGGTGCTGGAGGAGAGAGCGCAGCGCTTCTACCGGGCCAGGCTGCTGAGGAGGACCCTGCTCGCCCTGCTGGACCTGTGCACTCAGGAGAGGCTAGCGCAGTGGGACAGGGAGAGGCTGGCGCAGCAGCACAGCCACAGGAGGGCGATGCTGAGCTGCCTGGGGGCGTGGCGGCGGCTCCCCAGGGTgctgagggaggagagggacagggaggcCCGGCGAGAGCAGCTGCGCCGCAGAGTGGCCGAGATCCTCCCAGACTTCAGGACCTGAGAGGGGTGGTAGAGCCCAGCCCAACATTGCAGCCACGAGTGGACACTTACATTTGGCTGGGAGGGCTGGGTGAGCAGTTACAGAGCACTGGCTGAAACTGACCAATAGGAAAAGTTCCAGACCCAGGCTTTTGTCCATTGGGAGCGTCTTGACTGCACTGAAAGAGTTTTTCAGATGTGATGGGCAGAGTCTCGTGCCAGTGGGGACTCCACAGTCAGCAAGCAAGTGTTCAAGAGTGAAGGCTGtgagtgtttttaattgttcataCAGAGGCTTTTCCATTGCACTGAAATTGCAATGAGGACACCTGATTATGTAAGAGAATTTCAAAACTAAAGCCTCAATAAGTGTCAGCAGTCAGGACTGCAAATAAAGGGGGTTTCCACcactttgatttgtttaaataactatatatatttaaatatgaattagcTTTAATATTTCTGGGCTGTACGTTTAGACTGTAAGGATCCTGatgtcaaattcaaaacaaacatgactTAATTCTTCCCCACACATCGCTACAACAGTTTAAGTTCACCTACCTGTCCTGATTAAGGGAGGGGTCAAAGGCTACTTCGTCCACTGTAACAGTGGGCATCAACGGTAGGCAGGTGCCAGCCCGTGTCTTTGCTGTAGCGGAAGAGTGTCACTGCTCGGGGGCATCTGTTTATTGGCGAAGGGCATTTCTAGGATACCAGCCCTGAAGGCTAGGACTGTGTTGGGGTCCTCTGTGCCCAAGCTCCTTGTGCCCACCTGCCCCCGGACACGTGCCTGTGCTTCATCCTGCTGCCTTCATCACACTCACACAGGATGTGGCTGCAGTGACACACATGGGCCCCACAACTCCCGCACATGCTCATGCTCAGGGGGAGGAAACAAAGCTCagttttatttaaggaaaacaaTGGGGGAGGGAATTAATTGCTCATGTATAAAGCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17335 lncRNA upstream 77652 23943274 ~ 23944762 (+) False AMCG00016506
TU17327 lncRNA upstream 139468 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA upstream 139468 23880960 ~ 23882946 (+) False AMCG00016502
TU17308 lncRNA upstream 156614 23862215 ~ 23865800 (+) True G13979
TU17414 lncRNA downstream 50061 24080017 ~ 24103017 (+) True G14057
TU17505 lncRNA downstream 287844 24317800 ~ 24321319 (+) True G14132
TU17511 lncRNA downstream 307014 24336970 ~ 24338848 (+) True G14136
TU17494 lncRNA downstream 340370 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA downstream 340370 24370326 ~ 24375827 (+) False G14127
AMCG00016508 mRNA upstream 49573 23959304 ~ 23972841 (+) True AMCG00016508
AMCG00016506 mRNA upstream 77390 23938051 ~ 23945024 (+) True AMCG00016506
AMCG00016507 mRNA upstream 87964 23925791 ~ 23934450 (+) True AMCG00016507
AMCG00016509 mRNA upstream 108981 23904004 ~ 23913433 (+) True AMCG00016509
AMCG00016502 mRNA upstream 141248 23866267 ~ 23881166 (+) False AMCG00016502
AMCG00016515 mRNA downstream 43766 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016520 mRNA downstream 59874 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016519 mRNA downstream 74949 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016529 mRNA downstream 294994 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016537 mRNA downstream 449750 24479706 ~ 24542799 (+) True AMCG00016537
TU16114 other upstream 6900482 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7536411 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7536411 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7537266 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 9583808 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 50061 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 505062 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 978006 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1103242 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1120527 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile