RNA id: AMCG00016518


Basic Information

Item Value
RNA id AMCG00016518
length 1728
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00016518
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24007888 ~ 24020791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGACACATTGCTTTTTATTGCTTACATTTCGATTATATCTTTTAAATTTGGATGATTACTTTTGTAATTTgcgttgtgtttttaaattattttgctgCTGGTCGCTGTACGGTTTGAACATCACTTCAGCACGAACAGCGAGGCACGGCCACAACGCTGCACTTCAACACGCTCAGTGGTGCACACCGCCGCCACTGATGATGACGTACACGGAGGGCTGTGATTGGTCGTGCGCTCATAACAGTGCGACGGTGTAGTTCTCCCGTGAGAATAGGACTACCCCGCTGCTCTCTGTCCAGGATGAAGCTAGAGCTGTCCCGTGTGGTGCAGGGTTGCAGACTGGGGGTCCTGAGTGGCCTGGGCAGGCAGGCCGATCGCAGCCTGCAGATCCCCGGCTGCCTGCTGTACACGCGCTGCGGCTCAGTACCCCACCTCACCCACGAGACGCTGAGCACTGTGGACAGCATGCCCACCGTTACCCAGCTCACACTGCCCACTCTGGCAGAACACCAGGAAGTGCTGGAGGAGTTTAAAGAAGGAGCTAGGAAGTTTACAGGCCTGCatgacactgtgctgtactgctcTCTGCACGACCCAGCCGCTCCGTCCCCCGCAGGGTACACAACTAACAAGacGGTGTCGGTGTGGGGCAGTGGCGGCCGTATGGAGCTGACGCCCTCGCGCTTCATAGCGCTGCAAGCCGCGGTGCAGCCGGACTGGTACCAGAGCATGGCAGACGGGGAGACGCTTCAGGCCGACACCTCAAGGAAGAGGGTGAAGAAGGCTGTGGACCGCAGCCTGGCCTTCCTGGACCAGTGTCTCCAGCTGCACCACCAGACCCAGGAGCTGAGCCACGCAGAGGTGTTCGGAGTTGTGGAGGGCGGAGACATTCTGGAGGAGAGGTTGCGCTCGGCCCGGGAGACTGCCAAGCGGCCCGTGTCTGGGTTCGTCCTAGACGGGTTCCAGGTGGACGCCATGAGCCCGGAGGTCCGACTCAACCTGCTCTCTGCCGTCACTGCTGAGTTGCCCGAGGACAAGCCCAGgtTGCTCCAGGGGGTGGGCCGCCCTGACGAGGTGCTGGAGTGTGTGCAGGCCGGAGTGGACCTGTTTGAGAGCTTCTTCCCGTACCAGGTGACCGAGCGCGGCTGTGCCCTCTGCTTCAGCTACACCTACCAGCCCGACCCGGAGACAGAAGGTATCGAGTTCACCCCAGTGCTGGAGAGAAATGGTGCCACAGAGGAGGCGGGAGTGCAGAAGACTGGAGAGAAGGAGGGTGACAAGGCTGACGATACCTGGGCGGAGGGGCCGATGACACAGTTCGagatggatctgaaagatgcaaGGTACAGGGAGGACTTCTCCCCTGTGGTGCCAGGCTGCTCCTGCTACTGCTGCCGCAACCACACGCGCGCCTACCTGCACCACCTGCTCCTCACCCACGAGCTGCTTTCCGGTGTGCTGCTGATGTTGCACAACATGCACCACTACTTCTGCTTCTTCCAGGCCCTGCAGGGGGCGCTGCGACACGGCCAGCTCCACTCCCTGCGACGGAGAGTGCTGCAGAGAAGAGACGGCACCTCCTAGGGGGTGGAGGATAGTggcagtattatatatatatattttaatgatatttggtagtttttttgtgttgttttttaaattacagatgGATGCTATTCATGTCTTAAAGACTGTATTCCACAAAGACTAATACTTATAATAAAAAC

Function

GO:

id name namespace
GO:0008616 queuosine biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008479 queuine tRNA-ribosyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15407 QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17361 lncRNA downstream 64510 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 66350 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 73421 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 74045 23933009 ~ 23933843 (-) True G14012
TU17328 lncRNA downstream 124929 23880959 ~ 23882959 (-) True G13990
TU17453 lncRNA upstream 126608 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 144366 24165157 ~ 24165420 (-) True G14093
TU17560 lncRNA upstream 315153 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 404373 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 532901 24553692 ~ 24566678 (-) True AMCG00016538
AMCG00016511 mRNA downstream 56559 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016513 mRNA downstream 70654 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016514 mRNA downstream 76308 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016510 mRNA downstream 82172 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016512 mRNA downstream 105083 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016517 mRNA upstream 8599 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016523 mRNA upstream 27029 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016524 mRNA upstream 42476 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016521 mRNA upstream 52651 24073442 ~ 24092600 (-) True AMCG00016521
AMCG00016522 mRNA upstream 102645 24123436 ~ 24141614 (-) True AMCG00016522
TU17295 other downstream 307633 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 552077 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3872341 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4902507 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7146709 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 290246 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 290246 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 860357 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 990550 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 991573 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile