RNA id: AMCG00016520


Basic Information

Item Value
RNA id AMCG00016520
length 1612
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00016520
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24089830 ~ 24101565 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCGTCAACAGGACACCTCACTACAGCCCGTTCTCCCCCGCTCCTCCGGCGACCTTTTGTCCTTCGATGGTGTGGAGCCAGCGGGGTCAGAGTTGAGCTGTCTGTGCGGTGCCGTGGAGGAGGGAGTGAGACAGATCCATGTGGAAGAGGGTATCTGCGGGAGTCGATCCTCACCCGAACTCAGCCCGAATTCACCCCCGGACGCCACACTACTGTCACCTTTACCCGTAGAGCAGTCGGGAAACCTGCCCCAGTTCACCATGAAAGGTAGCCGGATCGAGCTGGGAGACGTCACGCCACACAACATCAAGCAGCTGAAGCGGCTGAACCAGGTCATCTTCCCTGTCAGCTACAATGACAAGTTCTACAAGGATGTGCTGGAGGTGGGGGAGCTGGCCAAGCTAGCCTACTTCAATGACATCGCAGTGGGAGCAGTGTGCTGCAGGGTGGACCATTCCCAGAACCAGAAGCGGCTCTACATCATGACTCTGGGCTGCCTGGCCCCGTACCGTAGACTGGGCATAGGTAGGGCCCCAGCGCTCTGCTCTCGCAGCCCGTCTGTGCACGGGGACTTTGTGCATGTCCAGATCAGCAACGAATCTGCTATTGACTTCTACCGGAAGTTCGGGTTCGAGATTATAGAAACGAAAAAGAATTACTATAAGAGGATAGAGCCGGCGGACGCCCACGTGTTGCAGAAGACCCTGAAGGGCCAGTGCCCAGCCCCCGGCAGCGAGCTGCAGAAAGCCAACTAGAGCAAGGCGACTCACCTAGGAACAACACAactctcgcgctctctctcgCCCAAGCGCCAGAACTGTACCAGACGCCCAGTGCGAGAACTCTGGATGGTCGACGAAACATTTACCACTTTCTTCAAGGGACATTTAAATTTactagaaaagaaaagaaaagaaaaaatcgCTACATTtcttttgcaaaaacaaaatggagtcgttctaatgttttccttttattattattattattattattattataattattattgttatttttgtttcattcggTGAGTTTGATGACAAAACAATCGTAAGGTTTCAGAATCCAAAAGTGCATCAGAAGAAAGTGTTTAAGGAAGTTACCAGGAGCAGCCCTCTGAAGGGTGGGAGTTATAGGTTTATGAGTTGttagtctatttttttttttggtcttttttccacccattttaaagtaaaaattgGTCATTAAGGTTAGGGAAATGCATCTTTGCCGTTTACAAAAGCTGATGCCGGAGAAAGGAGTGACGGTAGTGGGAGGCTGTGGGTCCACAGCAGCGAATAACACGGCGCCTGGGATGTTCAGCGTTGTGTTCCGTCAGTGGGGCAAAAGGAAGAACGCAACTAGACAACATGGGTaaaaaggaggaagaaaactgcactgattttttttttttaaagactgaatGGTTTTGCGACGAGTAAATGCGTTCACTGCGTTCTTTCAGCCATGTCTGTGGGATCCAGTCCCTCCGGTTAGCTCTAACACAGAAAGGGGATTGGGAACACCCAGCCTGTcggggtggggggaggagggaCTGAGGGATGGGGATTGAAGTCCACAGTGAAATATCTTGGTGGCGGTGTGGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001756 somitogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008080 N-acetyltransferase activity molecular_function

KEGG:

id description
K20793 NAA50, NAT5; N-alpha-acetyltransferase 50

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17335 lncRNA upstream 145068 23943274 ~ 23944762 (+) False AMCG00016506
TU17327 lncRNA upstream 206884 23880907 ~ 23882946 (+) True AMCG00016502
TU17326 lncRNA upstream 206884 23880960 ~ 23882946 (+) False AMCG00016502
TU17308 lncRNA upstream 224030 23862215 ~ 23865800 (+) True G13979
TU17505 lncRNA downstream 216235 24317800 ~ 24321319 (+) True G14132
TU17511 lncRNA downstream 235405 24336970 ~ 24338848 (+) True G14136
TU17494 lncRNA downstream 268761 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA downstream 268761 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA downstream 268761 24370326 ~ 24375031 (+) False G14127
AMCG00016515 mRNA upstream 12544 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016516 mRNA upstream 59874 24022414 ~ 24029956 (+) True AMCG00016516
AMCG00016508 mRNA upstream 116989 23959304 ~ 23972841 (+) True AMCG00016508
AMCG00016506 mRNA upstream 144806 23938051 ~ 23945024 (+) True AMCG00016506
AMCG00016507 mRNA upstream 155380 23925791 ~ 23934450 (+) True AMCG00016507
AMCG00016519 mRNA downstream 3340 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016529 mRNA downstream 223385 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016537 mRNA downstream 378141 24479706 ~ 24542799 (+) True AMCG00016537
AMCG00016536 mRNA downstream 467563 24569128 ~ 24580184 (+) True AMCG00016536
AMCG00016541 mRNA downstream 480412 24581977 ~ 24597847 (+) True AMCG00016541
TU16114 other upstream 6967898 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7603827 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7603827 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7604682 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 9651224 14437771 ~ 14438606 (+) True G12587
TU17581 other downstream 433453 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 906397 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1031633 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1048918 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 1048918 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile