RNA id: AMCG00016521


Basic Information

Item Value
RNA id AMCG00016521
length 6193
RNA type mRNA
GC content 0.52
exon number 18
gene id AMCG00016521
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24073442 ~ 24092600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACTACCTGCTGTCGTATCGCTGACAAATTCTTATCCAAGGAAGGGGAAAAGGCTTTAAACCACTGGAGCTTGGAAAGATAAGAGTCAGCAATGGACTTCTCAAAGCTGCCCAAGATCCGTGATGAGGATCGAGAGAGCGAGTTTGGATATGTGCATGGAGTCTCGGGGCCTGTGGTGACAGCCACCTGCATGGCAGGCGCAGCCATGTACGAGCTGGTGCGTGTCGGGCACTCTGAGCTGGTGGGCGAGATCATCCGGCTGGAGGGGGATATGGCCACCATCCAGGTCTACGAGGAAACCTCTGGTGTGTCAGTAGGTGACCCAGTCCTGCGCACAGGAAAGCCCCTGTCTGTGGAGCTGGGCCCTGGCATCATGGGCTCCATCTTTGATGGCATCCAGCGGCCCCTGAAGGACATCAACGACCTGACCCAGAGCATCTACATCCCCCGCGGTGTCAACATCGGCGCCCTCAACCGCCACATCAAGTGGGAGTTCACGCCTTCCAAGAACCTCAGGgttggCAGTCATATCACAGGGGGTGATATCTACGCCACGGTCTTTGAGAACTCTCTCATTAAGCACAAGCTCATGCTGCCACCACGGAACAGGGGCACCGTCACCTACGTGGCGCCACCCGGCAACTACGACATCTCGGTGCGTCCCGTCACAGAGAAACTGCCCGCCAATTTCCCCCTGCTGACCGGTCAGAGAGTCCTGGACGCCCTCTTCCCgtgtgtgCAGGGTGGCACCACAGCCATCCCTGGGGCTTTTGGCTGTGGTAAGACTGTGATCTCGCAGTCGCTGTCCAAATACTCCAACAGTGAGGTCATCATCTACGTGGGCTGCGGGGAGCGCGGAAATGAGATGTCGGAAGTGTTGCGTGACTTCCCCGAGCTCACGATGGAGGTGGACGGGAAGGTGGAGAGCATCATGAAGAGAACCGCGCTGGTCGCCAACACATCCAACATGCCAGTGGCTGCCCGAGAGGCCTCCATCTACACAGGGATCACGCTGTCAGAATACTTCAGAGACATGGGATACAACGTCAGTATGATGGCCGACTCCACCTCTCGCTGGGCCGAGGCTCTCAGGGAAATCTCTGGGCGTCTGGCTGAGATGCCTGCTGACAGTGGATATCCAGCCTACCTGGGCGCCCGTCTGGCTTCCTTCTATGAGCGAGCCGGCCGTGTGAAGTGCCTGGGaaacccagagagagagggcagcgTCAGCATCGTGGGCGCTGTGTCGCCCCCTGGTGGTGACTTCTCAGACCCTGTGACATCAGCCACCCTAGGTATCGTACAGGTGTTCTGGGGTCTGGATAAGAAGCTGGCCCAGCGCAAGCACTTCCCCTCCGTGAACTGGCTGATCAGCTACAGCAAGTACACCCGGGCGCTGGACGAGTACTACGACAAGCACTTCCCAGAGTTCGTGCCCCTGCGCACCAAGGCCAAGGAGATcatgcaggaggaggaggacctGGCCGAGATCGTGCAGCTGGTCGGCAAGGCCTCTCTGGCGGAGACTGACAAAATCACCCTGGAAGTGGCGAAGCTGATTAAGGACGACTTCCTGCAGCAGAACGGCTACACTCCGTATGACAGGTTCTGCCCGTTCTACAAGACAGTGGGCATCCTGTCTAACATGGTCGCCTTCTACGACATGGCGCGGCACGCGGTGGAGACAACGGCACAGAGCGACAACAAGATCACCTGGGCCATCATCCGGGAGCAAATGGGCGAGATCCTCTACAAGCTCAGCTCCATGAAGTTCAAGGACCCAGTGAAGGAGGGAGAGGCCAAAATCAAGGCAGACTATGCCCAGCTGCTGGAGGACATGCAGAACGGCTTCCGCAGCCTGGAGGACTAACTCCCCCTGCCAGCTCCCTAaccccccgccccgccccgcccttCAACACCACCGCAGGCATCAGAGCtccctgtgcagtgcagtattcCACCAACGCGGTGTCCTGGTGTTTCTACTGAACGGGTTTTATTTTCGTGATCAAACATCAAAAGGGTTCCACTACGACTGAACATTCCTGAACTGTTGTGAccgtttgtttggttgttttttgttgttttcttcttttcattctgCCGTATATGGCGCTGTAGTGGAGTAACCCTCCCCCAATATCTCTAtggccacagacacacacacacacacacacacacacacacacacacttaagaTGTCACAGCCTGCTGTTATAAAATTACATGTGGAAGTTAGGTAGTGAGTGATGTTCTGTGCTGTAGCTCCTGCATTAAGACAGCCTGCCgttgtactatatatatatatatatatatatatatatatatatttttttttagaaatgccACCAGCAGAGTAGAGACGGAGAAGTTGAggcggcagcagcagcgcgGTTCAGGTTTCGGTTCCCTGTGGCCCTGCCGTCGGGGGTGTTGGGCACTGTTCCCTGCCTAATGGGGAGGTGGGCTGCTGTACTGCAGGTTAGCCTGGAAGGCTGGGATGTAACTGAGAGCCAAACTGTGAATCAGACTGAATGGATGTTTCATGTTAGCAGCTGATATACAAGTCTGATTCAGCTGCACAAAAGGCAGGGGGGATTGTTGGGGAGGGAGTGGGGTTGGGAACAGTGGCCAGTTGAGACACATGACAATACAATCTAGACCGATCTGACTAGGGCACGGCTGACTGGACTGCAGAGGTGGTCTGTTGCTCCTGTGCTTTCGTGAGCTCCAGCGACATGTAGACCCCCCTCCCAACACACGCCATCTCTCCAACCCCTGTCCACTCAGCAGCCCAGGCATTTCACTCAGTCTTTCAGCACAGGGAAGCCTCTGCTCACCCAAACCCCTGCATTGCAAAACAGAGGGCCCACTGATCCcctgccacccccaccccactcaaGACATTTCCACCCGTTTCCCTTTCTACCAGGTAGCcatctcatctcatctcatctcattTCATCTCATAGCTGTAGCTGTAGacctaaataaaatgtttaaaaaaatacacaaaaaaagaaaaccaatacaaatgGATGTACTTGTTGTTAATGTTCCctacaaacaaaagaaataattatatttaaaagaagaaaatcagACTTCTAAACTAGGAAGTGTGGAGTTTGAAAGCAAGGGATGAAACAgttctgtatttattgcagGCAGGTGGCTGAAGCCTGACTGTGGTTCTGTATTTCAggtgttgatgtttttttttaattttaagtattttgttggttgtttttctgattttcttcctctctttaGTCACTcgtgtttgctgtgtgtgtgggtgcacAGGGCCGTGCACATGTTCATGTCATATTCCAGTGGTATCCATGTGATAAATTGTTTCAGTCCCAAAGAATAAACTGTTGAAAAATGATTCCAATGAGTgagctgctgtgtttgtttagtttttttgtcagcattttttCCACTACAGGTGTCCCACAGGTTCCTTCGGCACAGTTCTTTCTGAAGACTAAAAAGATCATTAGCACACGGAAAGCAGGTATAATAGTCGCAGAAATCCCAAGCATGAATTGGACTCTCGTGGTTACAGGGCATTTTGCTTCCGTCAACGCTGTGCCCGATGGACTCAAACCGAGTTTCTGCGTCCCGTCTGCCCCCCTGCATTCATTACCAAGATGGCGTGTGGGTTGTGTCTGTGCGATATCATTTACAGATGCACCTAGAGACCCCAATGACAAACAGCCCCCCTGTGGTCACAGCCAGTTTACAAAATCCGGTCGAGACACGAAGGCTGCGAAAGCAGGATCAGAAGCCGCCTTACCTGAAACGGTTGTAGGAATGCGAGGGGCAGTGCACTTGGAATGTGTCTGTTCTCTGCGAAGCCCCTGGCTGGTGTGCGGCCTGTCAGGGGACTGCGCTCCCTCTCCCAGCTGCCCTCCGGTTTTCCACAACGGTTACAAAAACAGCGTGCGTCTGCCTGTCATtccagtacagacacacagacacgcacacacacacaacagcaccaAGCAGAAAGGAAAAGGGAGACCTGCAGCTCCTCCTGTATCGTGTGTTTTATTGAAGCTTCGCACACAGCAATCGGGACCAGGCATTGTTTGTAGCCTGGCCTTACAGGAAGTTAGttagtgtgtttgtttagttagaTTAGTTTATTGCTTTCCTTCAGCCTCCAGCTATCCAGGGGGTCCAGTAGTATTCATGCAGCTCATACAGTAGCACTGTTAACCCTCACGAAAGTTTAGCTCAACCTGCATGGTCATttggcagttttgtttttacccaCAGTTTCCCCACTATACCTCCTCACCCTCCACTGCAATAGCACTTTGTTttcctacactttactgtgtggTTTTACCATGACGATTACACAGCAGCAAACTGACAAGGTTTACAGCAGAAGAAATGGCTAAATCTGATTAAAtcatacacatttataattcacgtcataatgttttttttctttattgttctACTTTAAGAAACTAAGCAGTGGTTAACTGTCTCTGACAACTTCAGGTAGGAGTGAGTGATCTGCTGAATAGCAGGAGGGAGACTGAGTGACCTTGGGATTTCTGTCTCGTATTGGTCCCTCTCTGATGGAGATGCGGGCAGCACAGTAGCAGGCTTCAGGGAGGAGCAAGGCCGTGGCAGTGTGTGCTACCGCAGGGTGGAAGAGGACTCGAGCCAGAGCAGTCCCCTTCCAGCCAGTTTTGCACCCGCAATCACGTCCCACAGCATTCCTCCTGGATTAGTTTACGCACACCTGACGCAGTAAACAATGGTTGCTGTAAAAGCATTACAACTGACCTCAGTATTGGAGATTGTAGTTATACAGGTGAGAAAACCTGTCCTCAAAGGAGAAATAAGTGctcactaaaataaatacataaacaaatctataaataaataataaccatcGTTTCACTCAGGAATCGGAGCACCTCAGGCATGAGGCTTTCATCCAGAATCAGCCTGAGGAGTTTAAAATGGTGTGAGGGGGATTTTTACTCTTACTGGCTTTGGATGCCTGTCTTTCAGCAGACCAAGTGTCTGTCTCACTCCTGCGCTTTGGCCCGCTCTGTTGTGGCACCAAACATCAACTGAGCACAACCgatttactgaaaacattttaaactgaatgatAAAACAGTCGTCATGGAAACGAGTGAGCCGGAACACCAAGGCCATCCCGTCAGCCATCTTGGCCTCAAGGGGGCACCTGTTTATTTCTTGAGACACATGAGCTTCTCTCTGAACTGCGGCACTATGATGGTCACCAGTCCCACCGTCACCCCCACCGCCGCCACCACCACCCCGATAATCGTCCCGATCGACTCCTCCATGCCGAACAGCCCTAGACTCTTCCGGATGCTGAGCTTGGTGCCGGAGCCCTGGAGAGCGGTGCCATTTGCCAGCTCCACGTGGCAGATGTAGATGCCGTAGTCATTGGAGGTGACGTTGAGCAGCGTCATGGAGGCGTCCCCGCTCTCCAGGTCCCCGCTCAGGTAGGCCCTGCCAAAGTAGGCTTCGTCATCTGTCCTGTTCATCTGCAGCACCGTCAGCTTCTCCTCCAGACGCTGGTTCGTCCAACTGACGTACGAGACCACGGCCGTCTTCAGCAGGCAGACGAAAACCACGTTCTCCCCCTCCACTGCTTTCTCCTTGGGGGGGCTCTGCTCCAGGACAGGATGCCCCTGGGCCTGTATTGGCTGCTGCCCTGCTGTGCCCTGGTCTGTTGGAGGGGGCACAGTGGTGAACGTCACCTGACCTGCTCCAGCTGTCCAGATCTCAGGGGCCATCGGGCCAGCAACTGTGGCACTGTGAACCACATGGCCGCACAGGAGCAGCACTGTTAAAGCAGAGAGCAGCAGGCGTGCGCGGGAGCTGGAGGGAGCCGAGAGGAGCATGGCTGTCAGTGTTCAGGGGCAGCTCTGTGTACtcagggggaggagagagacccACAGCTAAATTCAGACAGGGGCTCAGGCTCTGATCTCGTTTCTATGTTGGTGTCATTACAGCAGGCAAAGTCTTCCTctagtggaaaaaaacaaacgcaAGAGGACAAAACCGAAGGGGACTGCCAGAGCAGTTCACCCGTACTCATCCCTCCAACGGCCTCCTCTGCGCTCGTTCTTAATTACTTCTACAGGTTGTCGGACTTCCTGTCCCCAGTGGTCACCCTTC

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17361 lncRNA downstream 130064 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 131904 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 138975 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 139599 23933009 ~ 23933843 (-) True G14012
TU17328 lncRNA downstream 190483 23880959 ~ 23882959 (-) True G13990
TU17453 lncRNA upstream 54799 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 72557 24165157 ~ 24165420 (-) True G14093
TU17560 lncRNA upstream 243344 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 332564 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 461092 24553692 ~ 24566678 (-) True AMCG00016538
AMCG00016524 mRNA downstream 5439 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016523 mRNA downstream 10840 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016517 mRNA downstream 33642 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016518 mRNA downstream 52651 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016511 mRNA downstream 122113 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016522 mRNA upstream 30836 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016525 mRNA upstream 105285 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016526 mRNA upstream 123347 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016528 mRNA upstream 154582 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016527 mRNA upstream 157517 24250117 ~ 24270251 (-) True AMCG00016527
TU17295 other downstream 373187 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 617631 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3937895 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4968061 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7212263 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 218437 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 218437 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 788548 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 918741 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 919764 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058814 True 2609 mRNA 0.49 15 NC_007116.7 24245682 ~ 24259992 (+)
grasscarp (Ctenopharyngodon idella) CI01000018_04361150_04364887.mRNA True 2138 mRNA 0.46 12 CI01000018 4360619 ~ 4364887 (-)