RNA id: AMCG00016523


Basic Information

Item Value
RNA id AMCG00016523
length 3244
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00016523
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24047820 ~ 24062602 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGGGTGCCCCGGGTTAACATGGTGAAGCAGCACTATGGGAATGACTTGGGGTTAAACATTGAAGAAATGGAGCGCTTGCTGACACCCTCCAATGACAGTGGGGTACAGGCAGGAATCACTATGAAGCAAGGTGGTGGAGAGCAGCCAGGGAGGCCACAGAGGCCGAGCTCCCTCCGGCTGCAGCAGGCATCGACGCCATTGGTGGAGGCCAGCAGCACACCTGAAGAAGTGAAGCTGAGCTCTCCTGTCGTCCTCAGTGGGAACTCAGTCAACATGGAGGAGCCCAAGGACAATGCTGTGCGCCCCAGGTCCTTGGAGCTGGACAGGCGGTTCGAGGGCAGGTCCTTCAAACGCTCCTCCCTCAGCCTTGACCTGAATGACAACGAAGACCAGGTATCGGAGAGGAGCATGTCTGACGTTCCTGAGGACGCTAATGACCACCTGGGTTCCAGTCCAGCCCAAGGCAGGCTGTTCATCAACCGGGTTTTCCACATCAGTGCAGAGAAGATGTTCGAGCTACTGTTCACCAACTCTCCTTTCACCCAGAGGTTCATGAACGTCAGGAAGATCACAGGGGTGGTGTCCAGCCCATGGCAGAGAGACAGCACCGGAGCCAAGAAGAGAACTCTGAATTACACCATCACCATCACAAACCCACTGGTGGGCAAGTTCTCCACTGCCACGGAAACACAGACCTTGTACAAGGACAGCCGGGAAGGGCAGTATTACATGGTGGATGCAGAAGTGTACACCCACGACGTGCCCTACCATGATTATTTCTACACCCTCAACCGCTACTGCATCATTCGCTCCTCCAAGCGCAAGTGCCGGCTACGCTCATCCTGTAGAGTTTCCTGTTGTGAGTTGGacctgctggaggaggaggccgAGCTGAACCAGAGCTCCGGAGACCCGGGGAAGCCGAGCGGGCTGCGGCGCCGACGGAGGACCTACAGCCGCTCTGTCTCGGAAAACCTCAACAAGCAAGGCATGCATTTCTCCGCAGGGGACCTGGGGGCCAGGGACAGCCCGACAGGAGGTGGCCTGGACTTGAAGGGAATGCAGAAATGGAATCTGACCAACATTGTAGCCAGTATGAGTGTAATCCTCCTGATCCTCACAGTGCTCAATGTCAGTCTGTTCTTCAAGCTGTGGGCCATGGAGGAAGTGGCTCACGGGATGCACCTGCGCACCAAGCTGCGGTTCCAGGAGAAGGCTGACCTGAAattgaCTCCAGATGCGAGTTCACGGCAGTTGCATCATCAGAAAAGCCCAGAAGAGCTACTGCTGCTGAGGACAGTGCTTCATGACTCCATACAGCTGCTGGAACAGCTGAGGACCTCGCTCGTGCTGCTGCAGAGGAATTTCGCAGTGCGCAATGAGACGGTGAAGGCGCCATGAGCCGAAGAAGAGGGAGTTCCTGCGAGGGCAGTGTAGAGGTGAATCCGTTTCTGTCAGCCCTTTGCAGCCTCTTCCGGGGTTTTTGCTTCAGGAGAATTCAGCCATTGAACTGAGTGAAGTGTCGCAGACGGGGTGATTTAACTGAGCAGTGTGTGATGGGAGGCCTCATTGTAGGTATTGTTAATAAGAGATTAAATGACCGcatggagattttttttaaagatatagaATGTATATATTCTACTTTTCCCCCCCAATTTGATTGAGATGAGCAAAGCAGGCCTCCAGTTTCTGacttctgtgttttttggtttagttttgtataatttgttctAGGTAGTTCAGTCACGGGGTGGAGATCTGCAGCGCCTCCAGCTGGACATTAAGGGCTGCAGCTGAAGGGCAGGGTCTTGCTGTGCAGTGTGGGAGCACAGTTCTTACAGTGGTTCACTCAATTATACTGAAAAgttctgctttatttatgtgaagaagctttttttttttttgcctctttCCTTCCTCCTTCCCCCTCCTTATTGGACATACAGTTCATACTGATCCAAAAGTGTGAAGTAAAGCTTGAATTTGTATCGATGCACCAGTGAAAGCATGCTCCGTTGTTTCGAAAGAGGGCTCTTTTATGGGTCGAGGGTACCGTTTTGTGGCTCGTCTACTGGAGCCACCGGTCCTTCCTGACCTGTGCGGGCTGCTCAAATAGGGAAGCCAATTGCCAGCTGTTCTCCTCTTGAGCCTTAAAAACCCTGAAGGGCCATTGAACAATTTCTCAGTCTATAATTCTCTTGCACTACACGGACCTGCACACCTGTGCCTCCGTTCGTTGCTGTGTAATAAAACCACTGTGATTGTATATTGAAGGAGAATTCTCTGCTTGCAGTTCTTCAGCATTATTTTAGGTCCAGGGAAAACCGGACAAGGCGTCTTAATGATTGCAAGAAAACTAATCTGCAAACCATAGATAAAGAAaagttttttggtttttaatgaatgtttgttttacttaaacagttttgatcattttattttttaactgttttaagtAATCATGTGTaagttttatttccattttgaaGTAGACAGATCTGTATTTGTCTAAGACAAAAGTACTGCAGCTCTTCAGATAAACCAGTTCTGGGAGAGTTCATGGTTTCCTGGTTTCTTGCTTTGTATTTCATAACAATGGGAAACGTATGGGTTCAATTTTGTATGTTCATGGACACCTTGATCCTTATATAGTTTTTGCACAACACTActgaatgtattatgtatgtgttttaagtTATTTCACAAGCCGTTAACGGAATCCATTAACGAACCAAACATCATGTATTTACTTCATTTTCTGTAGAAATGTTATTTCCcaacatgtgtatgtatgtatatatagagaaaatgtgtctgttttcagTGCTACAGATATCCAGAtgtttacattaaatcacaaagacCTTATCTGGTTTACAAAGCACAGGATGAcagaacaaaagacaaaacgCTTTCAAAGACAGTTTCTCCAGTGCCACTCTTGTATTTtctatatacaaaatatatagcttGTAAAAACTGTTTATAACATAAAATCAACCATGTAGAGTTTGTTATTTAGAACTGTTTAAGGAAGGTTAAGGCACTATACTGTCAATATGCAAGTTGCTGTTGtcaaataaagcatttgttCCCCTTATGATCTTTCAATTGCAttccaggcttttatttttacaaatccTTGTTGGGttaatgtatacaatgtattgatttcatTGGGATGATGTTCATGTTAAATGTACGCATCCCAGCAAAAGACCAGTGCATATTCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17361 lncRNA downstream 104442 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 106282 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 113353 23934166 ~ 23934467 (-) True G14013
TU17356 lncRNA downstream 113977 23933009 ~ 23933843 (-) True G14012
TU17328 lncRNA downstream 164861 23880959 ~ 23882959 (-) True G13990
TU17453 lncRNA upstream 84797 24147399 ~ 24147677 (-) True G14092
TU17454 lncRNA upstream 102555 24165157 ~ 24165420 (-) True G14093
TU17560 lncRNA upstream 273342 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 362562 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 491090 24553692 ~ 24566678 (-) True AMCG00016538
AMCG00016517 mRNA downstream 8020 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016518 mRNA downstream 27029 24007888 ~ 24020791 (-) True AMCG00016518
AMCG00016511 mRNA downstream 96491 23945194 ~ 23951329 (-) True AMCG00016511
AMCG00016513 mRNA downstream 110586 23934903 ~ 23937234 (-) True AMCG00016513
AMCG00016514 mRNA downstream 116240 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016524 mRNA upstream 665 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016521 mRNA upstream 10840 24073442 ~ 24092600 (-) True AMCG00016521
AMCG00016522 mRNA upstream 60834 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016525 mRNA upstream 135283 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016526 mRNA upstream 153345 24215947 ~ 24243375 (-) True AMCG00016526
TU17295 other downstream 347565 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 592009 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3912273 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4942439 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7186641 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 248435 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 248435 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 818546 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 948739 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 949762 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile