RNA id: AMCG00016525


Basic Information

Item Value
RNA id AMCG00016525
length 5492
RNA type mRNA
GC content 0.63
exon number 35
gene id AMCG00016525
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24197885 ~ 24213659 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCCGCTGGCGCAGCCGGACCCGGTAGCGCAGGCCGAAGCGCAGGGGGCGCCGCTGGCAGCGTCTGACAGCACGGACACACAGCCGGCCTCTGCCCCGGAGCACTCGGAGCCCAGGGAGCCCACACCGCCGGCCAGCACGGCAGACACTACAGACGGAGCGGAGAGGGAGCAGCCGGGCGAGAGGGCCGGGGATGCCACGGAGGGCGGTGAAGGGGCCGCCCCAGGGCAGACGGGCAGTGACGCCCCAGGCGGACCAGGCCAGCCGGAGAGCCCGACACCAGAAGCTGCCGTAGAGGAGACCAGTGAGGGCGCAGAGAGTGGAGAGCCAGAGccgcctgctgctgctgctgcacaggaGGATGCTGGGACGGTGGCGCAGACAGGAGAGGCTGCTGCAGACGCTGATGCAGACGCTGATGACGCTGCGGATGGTGCCGAGCCCATTGCGATGGAGGAGGCCCAGGAGATGGGTATTCAGCCAGCAGGggagcagagggagggagaggacagCAGCCAACAAGCCACGCACATCCCAGAGGACTTCTACTACGACTACGAGGAGCTGCAGTCACGGCCTTTCGTGTCCCCGGACTCTGGCATCCCCCCTAACCTGCTGCGCCTCATGTATCCTTCCATCATGTATCGATGTAGTAATTCATGCACCAGACACTCGTTCGGCTACGACTGCAACAGGAGAGCCAACCTGCAACTACTGGACGAGCACACGCTGGGGTTCGTGGCCGGGAACCTGGTGGTGTTCCTCGACCTGCGCAGCAAGGAGCAGCGCTACCTGCGGAGTTGCAGCGGGGGAGGAATCGGCATCATCATGGTCCACCCCAGTAAGGAGTTCTTGGCAGTTGCAGAGAAGGGCAACCAGCCAGACATCATTGTATATGAGTATCCCTCGCTCCGGCCCTACAGGATTCTCAGAGGGGGCACAGCGGAGGCCTACAGCTTCGTGGACTTCAACAGCGCGGGCTCCCTGCTGGCCAGCGTGGGCAGTAGCCCGGACTACATGCTGACGCTGTGGGACTGGAGGCAGGAGCAGGTGGTGCTGCGCTGCAAGGCCTTTTCCCAAGACGTGTACAGAGTAACCTTCTCCACAGACAACCCCGGGCAGCTCACCACCTCCGGCTCTGGGCACATCAAATTTTGGAAGATGGCCAGCACCTTCACTGGCCTGAAGCTGCAGGGGATGCTGGGAAGGTTTGGGAAGACGACTCTGACTGACATCGAGGGCTATGTGGAGCTCCCTGATGGCAAGGTGCTGTCAGGCTCGGACTGGGGCAACATGCTGCTGTGGGAGGGAGGGCTGATCAAGGTGGAGATCTGCAGGAGGGGGGGGCAGCCATGCCACGCGGGGCCCATCCATCAGTTCGTGTGGGACTTCGAGGGCATTGACACTGCGGACGCGGAGAGCGACAGCGGGCTGTTCGAGATGGAGCCCATGAACGAGCTGGTGGTGGGCAAGGACGTCAGCCTGCTGTCCATGGTGAAGAGCTTCCAGCCAGACTCCCCCATCTGGTTTGCGCAGGATGCCAGTGGGGCCATCTGGAAACTTGACCTCTCCTTCACCAACACTACGCAAGACCCCGAATGTCTCTTTTCCTTCCACGCCGGAGGCATCCAGAGCATGGACACCTCGACCACCTCTCACCTGATGGCCACCACAGCACTGGACAAGTCTGTCCGGGTCTTTGATATCCTCGCCAAACAGGAGCTGACCGCCAGCCAATTCAAACGTGGAGGGACTACGCTGACCTGGGCCCCTCGCCTGGTGAACCCGAAAGGCGGCCTGCTGGTGGTGGGGTTCGAGGATGGCGTGGTGCGGCTGCTGGAGCTGTTGGACCCCCGGGGGCTGGCGGCAGTGGCAGGGAGGGGGCGCTACAATGGCGCAGAGTTGCGGCTCTTGCAGagcttggacagcacggTGTTCTTCTTCACGGTTGGGGAGAGATATGAGCCGGTTGGCTTCGTGAGGGTGCCCGGGCCGGTGAGGGGGCTGGAATGGTCTCCTCCTTCACATGAGAGGAGCACGTTGCTGGTCCTGTGTGAGAACGGCCATGTGCTGGAGATCATGACCCCTGAGCCCAAGGCCCAGAGTTCCGGCCAGACGTTCGAGATCCAGGGCCTGCCCTCCCGGCACTTCCACTTCTGCAGCATCAAGTCCCGCATCCTGAGAGATGCGGAGGTTGAGCGGCGGCGGGTGGCGAGGGAGCAGAGgcagaaggagagggaggcacGTCTGAAGAAGAAGCAGGAGCAGGGGCAGACGCTGACGGAGGAGGACCTGGCGGAGGAGACCGagccggaggaggaggagctgccCCCCCTGCACAGCCCTGAACCTCCCAGCCCCCTGCTCTGTGGTCTCTACTCCCAGCCTGGGGCCTTCTGGCTCTCTATGggtGGATATGACTCCGGCTTTCTGTACCACTGCAAGTTCTCGGAGCAGCAGGGCGGAGAGCAGGAGCCGCTGCAGAGGGCAGACGAGCCTTTCAGCTTCCTGCCGGTTCAGGACACTGACCGTGACCCCATCTGGACCATCAGCTTCAGCTCCAGTAGACAGCTGCTGCTGTGCGGGATGCAGAGTGGCCAGGTGAGACTGTACCCCCTGCCGCCCCACGGCCCCGACCTCGCCGCCATGCAGGGCTTCTGGGCGCTCAGCCTCCACGACAACCAGTACGGCCGCCTGCGAGCGGTGCGCTGCAGCCACGATGACCAGTTCGTGGTGACCGCGGGGGAGGACGGGAACATGTTCATGCTCAGCCTGCTCCCTGCGGAGGATCTCCAGGCGGCGCTGGAAAAGAAGGCCAGGGTGCCCTCCCCCCGACATCGAGATGGCGAAACAGAGGACAGAGCTGGAGCGCATGCAACGCGAGGCGGAGCTGCGCAGGGCGGGGCGGCGGCTGGAACTGGAGGAGCTGCGGAGTTTGAACTGGACCCACGGATCGTGCAGGAGTACGAGAGACTGATGGGCCAGAGGGTGCGTGAGACGTGCAGGGAGCTGGCCTGGGACCTGGAGAAGCACAGGGTCAGGCTCCAGAAGCTGCAGCAATGGTACTTGGACAACTTGGAGAGCAACACAGTGGCAGTTAAGGCCTTCCAGAGTGACCACATGGTGTTCACCTACCGCCTGCTGGCCCCGTCCCGAAAGCTGCAGCAGCAGAAGGATCAGGGCCGGAGACCCAGCCAGTTGGGCATGGAGCGCCGCCGCAGCCGGGTGGATTTCAGCCATGAGAGCAGCTATCCGGAGGCCATCCCAGAGGACGTGGACTCCGAGGACGTGCTGCTGCAGAGGCAGGGGACGCGAGGCGCGGGCAAGCTGAGTGGCCGCCAGGCGGAGAAGCTGCAGAAGGCCATGGAGAAGGCGGAGAGAGTACGGGCCAGGATCCAGAAGAGGAAGAATGAGTGGGAGGAGCTCTACTCCTCGAAGCCTGACGAGAACTTCGAGGACCCCCAGGATGTGCAGGCCATCCGCATGGCCCAGGAGAATATGGGTGACTTCAAGCTGAAGACGGCGAAGGACTTCACGGTGCCCGAGCACCTGCGCATGAACGCGGAGAAGAAACGAATGCAACTGGTGGCCCTGGAGGAGAAGATAAATGAGCTGAAAACGGACATGAACGACAAGATCATGGCCCTGCGCGACTTCAAGAGCCTGTCCATTGCGCACATCAAGGACTGCGTGCGCCAGCTCAGGGCAGTGCAGAGGCATCTGCCCCCCGCCAAGCGCCAGCCCTTGCCCAGCGTGCCCCGGCTGCTCCCAGAGGAGACACCCGAGAACAAGCTGCGCTGCACCAGAGCCAAACTGCTCAAGTACAAGGAGCTCAGAGCCAGGCAGGCCCGCACTGCgcagctggaggagagagagggagggttcGGGGGGCTGGGCAGCGAGCTGACTGCAAGccaggaggaggagcaggaggaggaagaagaggaggaggaccaGGAGGAAGATGACACCGGTGTCCCTACCCAAGACTCCCAAGGCCCGTCTGAGCAGCACGCCATCACCCCCTTTGACATGGAGGAGGAACAGCAGCAGGAAACCCAGAGCCTGTTCCTTCAAGGCCACCTGCTGAAGCAGCACATCACACTGTTCGAGGAGCTGCAGCTGCTGAAGGAGTTTGAGAAGAGCGAGAACACGTTGCTGGAGAGGGTCAACGCCCGCAGCCAGGAGGAACTGGAACTGCAGGGCAAGTACGAGGAGTgtcagcagcagctggaggCCAAGAGGAGAGACATTGCCAAGCTGCAAGAAAGGGACCGAGCCCTGACCACCACCTTCCAGGCCTCCCTGGGGGAGAACAACAAGTTTGCCGACTTCCTCACCAAGGTCTTCAAGAAGAAGGTGAAGCGTgcgaagaagaaggagaagaagggaGAGGAAGaggaggagctggagagcGAGGAAGAGTCCGAGGAGGAGTCTGAGTGGAGCGACGAGGAGCTGGACTCGGGCTCCGAGTCAGGGCCCCTGGACGACAGCGTGTGCCCGCCCTACTGTGACCCTGCCCTGTTTGAGAACACCATCCAGCTGCGAGAGAAGCGCCTGGACCTGGAGGAGGCGCtgctggaggagaagaaggcGGCCGACATCCTGAGGAAGGAGTGCGATTCTCTGACCAAGAAGATGAAAGTGGTCAGTGCCAGCCTGTCGACAGCAGAGGGCGACCTGGAGCTGCTCCAGCGGGAGAAGCAGCAGAAGCTGAACGAGCTGGACGTGATGCTGACCCTGCAGCTGCACCAGATGGAGTTTGTGAATTATAGGTCGATGCTAACCCAGGCGCTGGTGTTGGACAAGTCCGCTCTGGAGGCGCTGGAGCGGAGGATCCAGGAGCTGCAGCAGGAGAATAGGCAGCAGAGTGAGCTGTACCGCCAGGCCCGCCAGCAGCACGTCCAGCTCCTGCACAACCACAGGGACATGGAGGCCAAGATCCAGGAGCTGGAGGCCAGGTGTGAGAAAGTGATGCTGATGAAGTTTGGCCGGCTGCTGGACCTGGAGGCCCTGCAGATGCAGACCCTGTCGGTCAGCAGGaacctggaggagctgaagcaggagagcagtgagagagaggccATCTTCACCCACCAGCTGCAGGAACTGGAGGATGAGGTGCGCAAGGCTACGGAGGCCCAGACAGAGGGTGTGCAGCTGCCGGGCCGGCGGCTGGCGGAGCAGGACGAAAGGCGTCGGCTGATCCAGCTGGTGGAGACACAGGCGCAGGAGTCCCAGGCCCTGCGGCAAGAGATCAGCCTCCTGTCCCGCAAAGGGGGCCACATCCTGCCCCCCGCCcagcccccccagcccctgCAGGATGGCATAGGGAGGCCAGCCCACAGGGGAGGGCATAGCAACCCACTCAGCCGCCACTCGGTGCCGGCCACTGGACAGAGCCTCAGCTAGGCCTGCCTGCTGTGGAAAGATCACAGCACCGGTCTGTCCAGAGGTCTGGACGCTGGATAATATCACCAGAGAAT

Function

GO: NA

KEGG:

id description
K24224 CFAP44, WDR52; cilia- and flagella-associated protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17454 lncRNA downstream 32465 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 50208 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 254507 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 256347 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 263418 23934166 ~ 23934467 (-) True G14013
TU17560 lncRNA upstream 122285 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 211505 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 340033 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 340033 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 388039 24601698 ~ 24602007 (-) True G14213
AMCG00016522 mRNA downstream 56271 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016521 mRNA downstream 105285 24073442 ~ 24092600 (-) True AMCG00016521
AMCG00016524 mRNA downstream 129882 24063267 ~ 24068003 (-) True AMCG00016524
AMCG00016523 mRNA downstream 135283 24047820 ~ 24062602 (-) True AMCG00016523
AMCG00016517 mRNA downstream 158085 24029390 ~ 24039800 (-) True AMCG00016517
AMCG00016526 mRNA upstream 2288 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016528 mRNA upstream 33523 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016527 mRNA upstream 36458 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016533 mRNA upstream 77035 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016531 mRNA upstream 95597 24309256 ~ 24323458 (-) True AMCG00016531
TU17295 other downstream 497630 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 742074 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4062338 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 5092504 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7336706 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 97378 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 97378 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 667489 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 797682 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 798705 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile