RNA id: AMCG00016527


Basic Information

Item Value
RNA id AMCG00016527
length 3134
RNA type mRNA
GC content 0.56
exon number 13
gene id AMCG00016527
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24250117 ~ 24270251 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcgtGGTAGGAAATAAAGAAGGATGTCAAGAAGGAGCCCCAAGCGCAGAAGCAGAAGGCTGAGCTCTCCAACGGCAGCCCGTCTCCCGCCGCTGAGCCCAGCCTGCGCCCCCCCAAGAAAGGTGAGGGCATTAGGAAAAGGAGATGCAAAGCGGCCTTCAGCTACATGCCGCAGAATGAGGACGAGCTGGAGCTAAAAATCGGCGACATCATCGAGGTCCTGGGAGAGGTGGAGGAGGGCTGGTGGGAGGGCACCCTGAATGGGAAAACGGGGATGTTCCCTTCCAACTTCATCAAGGAGCTGCCGCCGGAGCGGGAGGACCCCCCAACCCCTCAGGAGGATAGCAAGAGCACTAGGACGAgtcAAAAGGACAGCACCGGCTCAGAGAGCGACGGCGGAGACTCCAGCAGCGCCAGGTCTGAGGGAGGCAGTGTGTCCTCGGCCACAGAGATCCAGCCCAAGAAGATCAAAGGCTTCGGATTTGGGGACATCTTCAAGGACCAGCCCATCAAGCTGCGCCCACGCTCCATGGACTTGGACAGCGAGCTCAGCCTCCCCAACAGAcagcaaGTGGCGAAGAAGATGCCCCCTGGCTGCCTGCCTCAGGAAACTGCGAAAACGGAGCCGGAGAGTAAAGCCAAGGtGAAGGAGTATTGCAAAGTGATCTTCCCGTATGAAGCACAAAATGAAGATGAACTGTCGATCAAGGAAGGCGAGATCGTGGTCATTATCAGTAAGGAGTGTGCGGACGCAGGGTGGTGGATGGGCGAGCTGAACGGGAAGCAGGGCGTGTTCCCCGATAATTTTGTGAAGCTGCTCGCCCCCGATGTTGAGAAAGAGAGACCGAAGAAACCACCCCCCCCTGCCGCGCCCACAGGTAAGCAGAGCACAGGtaatccccccctccctcactgCGCCAGACTCCGCTGCAGAACCGCTTGATTGGCATGAtcaagttatacatttatacagatGATGTATTCAGAGTAAAGGGATTAGGCAACAAAgtgttctctctgtctctctctctctcgcttcctTGCCTCTGAACTGAATGTCCTCCAGTACCATCTCAGTGGTACTTCTGTAGCTTATTGCACAGGGAATCAGTTTGggtgtttatttgtaaatgtagtgGGTCCTGATTGTAACTGTTCCTCAAAGGAGGCATTCACTGATAGCATTTGTGTGCGTGTTGTCATCTCTATAAATGTTCATAAATCACTGTGTGGACTCTTCTCTAAATGTTTCAACAAGACAATGTGTTGTTGatcttgatttttttccctgtctGTACTAAAACAACCTCCCCCTCTTGTGCAACTGGCGTTTGTGAGCCTCATGCATCGAGCTGCACTGTGATTCAGACATGCATGTGCACTTTAACTCGTTCCCTGCTCCTCCACCTTGCGGCTCTAACCCCCGTGGGGATGGTCCTCATAGTATATCCAAAGCTTTGGAATGGCACCCCATCTTCACCCATCCCCCCCGAGGAAAGGAAAGCAAATCAGCTGCAACGCGATCACTCCACATGCCCGCCTCCAGCTCCGCAGCACTTAGCATGCAGCTACGGTGAGAGCAGGCACCCAAGTCGGCTGACGGCTGACCTAAATCACTGGGAGCacaatttgcatgttaatttaGCTCTGGGTCCGGGAGACTGCAGTTGCACGGTCGACAGAGCAGACAAAATGCAGTCCGTGCTCGCTGCACCATCCCCAGGGCCTCCGCCTCCTCCTGCAGAATTGCTCTGTAATGACCTCCTGGCTGTTCCTGTAATTGCCTCATAAAACAGAGTGTAAATTCCCCCGTCATTTCATTAATTCGATCGTTTTACATGCATAATAAATGGCCGAGCAGCCTGTTCAGACTGtcagagttttattttatttatttttaattttttccccctcgTTAATCCCCAGTGCAGGTTCTCCTCTGCACTGGAAAGGCTCCTGCGGTCACTCTCGCCCCCTGGTGCTGATCTTTGCTCTTCCTATCACCCTCCCCTCCCATGCGCGGTTCGTATCCCTCAGCCACCTTAGGCAGGAGCGGAAGGGGGAGGTTCTGTCCTGTGACCATCAGCCAGCCCCTCGGTGTGTAGCAGCTGGCCTCCTGTGCGGTCTACCCCCTGGTGGTCCAGGCATCACCCCCCAAGTCTCTGCAGCTGACAGCATTTGAGAATCGCTTACCTGCCATGAGTTTTTAACCATCCCCCCCCCACTAACCAGCAAGCGGGGCTCAAGGGCAACCCTGCATGCGCACACTAACCTCCCTACCAGACTAACCGAAACCTCCCGTCAGTCTGTCAATCACCCCTCCTCCCCAGTTGACCTGCCCACTGATAATGCCGTTGTACCAATTCTCAGACAAAAAGACGGACGTTAGAAAGGTGCCCCCGGAGCGTCCCGAGTTCCTCCCGCTCAGAGTAGAGGACAAAGCGTGCCGTGACCCGGCTGGGGCGGCACAGGACAGTGGCGTGGAAGGCCAACGTGCTGCCCCACAGCTCCCTGCCCCGCTGGAGTTATTAGATGATGACCAAGCAGTAAACATGAAGATACTTGGGAActttgagagtgtgtgtgtgggcgagTGGGCGAATGAGAAGCCAGAGAAGGATACAAAGGCCGCTGACATCCCCAGACCTGCCCTGCCAGCAGTGCCTCCCAAGAAACCGCTCCCCCCCAAGACCAACTCGCTGGGCCGCCCCGCTGCCCTGCCTCCCAAACGCCCCGAGCGCCCCGCCGTGCCCAGCATCAGgTGCGAGAGCCCGAAGACGGACGGCGGAGGGACGACGACTGCTGACCGCGGCTCCTCGGACAGAGTCAATGACATCGGGGAGAAGCCTGGCCGCCCCAGCGCACTGCAAGTCGATATCGAAGACTTCGACTCCATAGTGTCGACTGCGGAGAGGCTGAACCACCCCACCACGACCAGGCCACGTGTGACAGACAGACGGCCTCGATCACAAATCTTCACCTcgGATCGAGTGGGCATGGAGGGGGGGATGGATTCCTCACCCCAGCCCAATTCCCACTTGCTCCCCGGGCTCCTTGCTCTGATTGGGACCGGCTGGCCTCGCTGTGGGGAGGCAGAGCTGCTGCCCGTACTGCGCAATTCTTACAGGAACTGa

Function

GO: NA

KEGG:

id description
K12470 SH3KBP1, CIN85; SH3 domain-containing kinase-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17454 lncRNA downstream 84697 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 102440 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 306739 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 308579 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 315650 23934166 ~ 23934467 (-) True G14013
TU17560 lncRNA upstream 65693 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 154913 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 283441 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 283441 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 331447 24601698 ~ 24602007 (-) True G14213
AMCG00016528 mRNA downstream 540 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016526 mRNA downstream 6742 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016525 mRNA downstream 36458 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016522 mRNA downstream 108503 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016521 mRNA downstream 157517 24073442 ~ 24092600 (-) True AMCG00016521
AMCG00016533 mRNA upstream 20443 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016531 mRNA upstream 39005 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016530 mRNA upstream 68193 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016532 mRNA upstream 85660 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016535 mRNA upstream 101818 24372069 ~ 24375807 (-) True AMCG00016535
TU17295 other downstream 549862 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 794306 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4114570 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 5144736 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7388938 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 40786 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 40786 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 610897 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 741090 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 742113 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile