RNA id: AMCG00016530


Basic Information

Item Value
RNA id AMCG00016530
length 2745
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00016530
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24338444 ~ 24354199 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGCCACACCGGTGAAGGCAGATGCTCGCCAGCCCAGTGATGCAGCCCGTGTCATTTACATAGcggtgcaagtgtgtgtgtgtgtgtgagtgtgtgtgagcgagTGTGTGAGCGAGTGTGTGCGTGCTTGTCTGCCTGGCTGCTGGAGTGACGGTGCGTCTGCAGAGGAGAGGGGGGCTGAGCCGTGTGCCAGGGCTGGGTGTGCTGATTGCAGAGCTCTGCCTGCCGGTGCTGTTGGGTAGGGCTTCCCAGCAGAGCGAGAGAGCCACTGCTTGCTCACCTGCCAGCTACCTCTCTCCCTGCCCGGCGCTTTCACAAGGCTATTTATTATTACTCCTTTCCATCATTGTCGGAGTCATCCTCTTAGTCTTCTGCACTACGGACCtgagacagagaaaaaagacagagaggaggggagcaactaaacagaaaaaacaaaagaaaaggaaaaaggagaaTTATAAAGTGAAGAAGGGGGAGCGTGTGAGAAAAACCACCAAATGCAGCAGCCCGCTTCCGCCCCCAAGGGCCGCAGCGATGGCTCAGTCAGAGAATGTCTGTTCTTCCCTGTGTTCGAACGCAACGAGCAGGAGCGGCTGGAGGCCCTGATGCGCAGGTCTCTGGAGCGCAGTCTGCAGCTGGAGCAGAGGCCCAAGCGCTGGACCTGGGGCGGGGCCACGGGGACCGGTCCGGCAGCCAGAGAGGGTGACTGTGAAAATGCCCCGCCCCTTCCTGTAGGTTTACCCAGCGCCTCCGCCCCTCCTCCTGAGCTCGCTGCCCCCTCTCCTGCGGTGCCCTCCGAGCCCTTCAATGctCGCCGGCTGCACCTCAGCCCCCTGGAGAATCTGCTAGTCAGTCGGCTGCTCACCCCCACCCACTCTTCCCTCGCTCGCTGCCGGAGTGAGGCTCACCTCGGCCAGCCTTGCCGCCTTGGGCCCCCAGCCCCCCCCAGCCCACACAGGTCCCCGTACCGCGGCTCTCCGGGCAGGGCCGAGCGCAGGAAGACGTCCGCTGGCTCCCCGGGCTCCTCCGAGGACTCTGCCggcacccccccgcccccagaCACCCCCAAGAGGGAGACGGAGAGGCTGAAGAAGGAGAAGCGGCCGTCCTGCCCTGTGCCGGGCTCCCCGATGAGACGGGTTGACGCCCCCGCCGGCATGACCACGAGCAAGAGGCCCGCCTCCCCAGCCACGCCCAAGTTGGTGTCGAAGACTCGAGCCCAGTCGCCCTGCACGGTCAAGCAGTACCCCCCCTCTCCCATGAGGCACCGCGCCACCACCCCTGGGTCAGACAATGGGAAGAAGAAGAGTGACAGGGGCGAGGGGGCTGCGCTGGACAGACGTTTGGAGGAGGCCCTGGGCACAGAGATGCCCGAGAAGAAACTGCCCAAGTCTGCCAGCAGTGACCTGAGTgccagggagggaggagagaggagtgCAGagCCGTCCCCAGTGACACCCACGGGGAAGGCGATCGCCGGCACCACGGATGCGGAGGAGGCATCACGGCTGCTGGCGGAGCGGCGGCGTCAGGCCCGGCTGcagaaggagctggaggagcggCAGCGGCGCGAGCAGGAGGAGGCCGAGAGGGTGAAAGCAGAGGCCTTGCGGATTAAGATGGCGGAGGAGCGGGcgaggcaggaggaggaggcccGGCGCGCCGAGgagcagaggcagaggcaggagctggagcagagGCAGCgcgaagaggaggagaggaggcagcgcgagagggaggagagggagctgCAGAtccagctggagagagagAGGGAGGAGGCCGAGGTCAAGGCCCAGCAGGAAGCGGAGAGGCTGCGCCAGGAGAGGGAGTTGCTCCAGCTGCAGGGCGAGCAGGAGAGACTGCAGAGGAAGAAGAGGATTGAGGAGATCATGAAAAGGACCAGGAAGAGCGACGCGTGCGAGAAGAAGGACGAGGGGAAGCTGGAGGGGCTGCCTGCTGTGAtgaACGGGCAGGtgctgtctgtgctgcaggGGACAGGGGTGAAGGCCAGGGGGGGGCCCTCTCCCCCAGCGGCCAGAGAGGCTCTAGCACCCCCCCTCATCAGCCTGCAGCCGCTGGACATGAAGAGCAATGAGCTCGTCTCCCTCCCGGACTTCTCTCCCGTCAACGAGATCCACCACAATGGCATGAGCAACTCCAAGGCCCTGGAGGACCTGCTGGATCTGACGGGCCACATCGCCTACCCCAAGCTGGGCGGCCCCCCTCCCGGCCTGGGTGACTGCAACAAGAACCTGATCGAGGGGTTCTGCACCTCCAGCTCAGAGACCCAGCTCATAGAGTCCTTGGCCCAGTCTGTGGACAAAGCCAACGTCCAGGCTCTGGAGACGGGCAGCGCCGCGCTCAGGCGGGTACAGCGGGGGATTCCTCGTCCTGCCGGCGCCGGGCACGGGGGGCAGGAGAGCAGTGCTGAATGTAGTTTTATCTCCCTCTGAATCCGCACTCCGCTAATAATGTGCATCAGAGCAGAAACCCTGAACCCACTTCGCCATGACAGCAGTCAGGAggacagctgtgtgtgtttatagggACTCGCAGATGaagatgttatttttgttatatatatttagttttatttcatttgttctGGTTTCGACATATTTATTGCAGGTGACATCAAGAAACCACCACTGTGACAGGATTAtgtttattgctttgtttttatttttgaaggagggagtattttattatatataatgtatatgtatatatatatata

Function

GO: NA

KEGG:

id description
K24203 MAP7D2; MAP7 domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17560 lncRNA downstream 1617 24335944 ~ 24336827 (-) True G14171
TU17454 lncRNA downstream 173024 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 190767 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 395066 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 396906 23941318 ~ 23941538 (-) True G14015
TU17574 lncRNA upstream 70965 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 199493 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 199493 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 247499 24601698 ~ 24602007 (-) True G14213
TU17615 lncRNA upstream 251909 24606108 ~ 24606321 (-) True G14214
AMCG00016531 mRNA downstream 14986 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016533 mRNA downstream 34130 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016527 mRNA downstream 68193 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016528 mRNA downstream 88867 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016526 mRNA downstream 95069 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016532 mRNA upstream 1712 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016535 mRNA upstream 17870 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016534 mRNA upstream 21668 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016539 mRNA upstream 194178 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016538 mRNA upstream 200008 24554207 ~ 24566956 (-) False AMCG00016538
TU17551 other downstream 21642 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 21642 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 638189 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 882633 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4202897 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 526949 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 657142 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 658165 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 726369 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 919465 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile