RNA id: AMCG00016531


Basic Information

Item Value
RNA id AMCG00016531
length 2744
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00016531
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24309256 ~ 24323458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACAGCTGCAGCGGGTTTGTATCGCTGTGATCGGGCAGTATAGAACAGCAGTGACTGCAGAAGATGGCCAGACCTCGCTCCAGGTCTCCTAGACACAAGCACAGGTCCTACTCCAGCTCATACGGAAGTGCCCCGGAGCTCCAGGAGGGAATGCCGTTCGTGGGTCCCTGCGGGTCGGAGTCTCGTGACTACAGAGCCCAACCTGGAAGGCCTGTCCGCTGGAGAGATCCCAAGGGCAGCGGCCCCGCCCCCGGCTCCCACTACGAGAAGAGCGCTGCCAGGCCCATGTTGCCGGATGAGCGCAGGGCTCCCGCAGAGCCGTTCCATCGGCCCACCCCCCCGTGGAGGGTGCAGTCGGGCTCGTATCACGGATACCCCCCCCAGCCCCGGCACCACTCACCAGGGCCTTATCACAGCCACCGGAGACTCTCACCCCCCAGGCCAgcacaccccccaccaccaccgcGCAGGCTGTCCCCCTCAGGGCCAGCGCATGGACCTGCTCCTCACAGGAGGCCCTCACCCAGAGGCGCGTTCCACGGGCCCAACTTCAACCGGACCCAGCGTCCCTCCTCTCCAAGACACTTCCACGGCCCCCCCGGCAACCGGAGGCCCCCATCCCCAGCACCTCTCCACGGCTTTGTGGCCCACAGGAGGGCCCACTCCCCCGAGCGGGACGGGGGCCGGTGGCGCCCCGGCCCCCCCGCTGACCACCAGAGGAGCAACTGCCCGGACAGAGCCCCACGGGGCAGGAGCCGCAGCCCCAGGGCCGGCAGAGAGCGGCCCAGAGCACACTCCTTCGATCGCTCGGCCCGGGAGGAGAGGTGGAACGGGGGGTTGCACCTCAGCCCACGGCACTCCCGAGAGAGGAGGTATTCTGCAGAACGGGAGCTAAGAAAGCACAGCGAGACGacagaaaatagaaatgcaGAGTGGGGCGAGGCGACACACCAGTACTGGTCCCCGAAATGGAAAGCCGACCCCTCTTCACCCAGATACCACCAGGAGAGGGCCGGAGACGCCAGGAGGGAAGTCCATCGCCCACTGAAGTGCCGCGGCCGTGAAGgccgctcctcctcctcctcctcctcctcctcctcctgctcggCCAATGCCCAGATTGGACGCAGTCTCAAGTACCCGCGGGGGGATATGCCAGATCGCTTTCAGAAGCCCAAGTCATTCGGGAGCAGGGAGACGGAAGGCAGCTCGGCGTCCTCTCACAGCAGGGACGAGGCCCAGCTGAAGGGGAGGAAGAAGAGGCCGGTTCTGGTGGGAGGGACAAAGGCCTCGCCACCGCAGCACAGGGAGCCGGAGAAGGTGCTCAAGAAGCACAGCAAGCTGCCCGGGAAAGACGTGGCCTCCTTGCGACTGTCTGTTGCCAAGCAGAAGGTGGTGAACAAGCTGAGGAGTACAGCAGCCCTGTCTAAAGCGCCGCCGCCACCGCAGGGGAAGACCACTGGGAAGAAGAACCAGAGGAAACCTCACCACAAGCTTCCTCTCACTGGCAGCTCCACAACAGACGAAGGGGCGGCACAAACGGAAACGTTAACGATCAAAGTGGACACGCGGCACTCCATGACACGGTACAGCTCCTCTGCCcactcagacagacagctcTCACGGGACCTGGTGACCGCGTCCAGGCTGGCCTCAGAGCTGCAGCCCAGGGTGAAGCATGTGGGCCCCTGGAGAGAGCGAGCCCTGAAGAACCAAACAGAGAACTACTTCAGGCACGATAATCTGACTTTGAACGAACGCTTCTCCAAGCTGCACTACTCCAAGAGCTTCAGTCAGGAGGATGGGAGACGCTACTCCGGCTTGAAGATTAGCAGACAGATCGAGTTGCCGTCGCCGAACCACAAAGAGATGAAACCCGTGAAGAAAATTGGACCGACGCAGCAGAGCAGTTTCCACTCTGGCAGTCCCAATCATAGACCTGCTCACCTCATCAAGAATTCTGTTGTGGAAAGCCCTGGACACTTCCGGCACTTCAAGAAGCCCCTCATGGGCAGCCTGTCTCTGCGGCTCGGGGTGCAGCAGAAGCCTGTGTTCAAGAAGAGCCTGAGCATCCAGTCTAAGTACAGGAACCTGCAAAGAAGAACTTGCCATGCCAGAGGACATAGGGACCCTGTCGGGGGCCCGTCCAGGCGCTCGCTGCGCTGGGACACTCAGTCCTGCTCCGTCCTGTCTCCAGCTGCtgaacatgttattttaaatgaaatagaaaTTAGGTCTGAACTGCACCCTGTGCACACGAAGAATGGAAACTCAGAAGTGAGGAGAGCCTCCTACAGAGTAGTGACAATTTCTCCTGTAGTGAGCGCCACCATGCCTTCTACACAGGGCCGTCTCCTGCTGCTCTATATATGTAAGATGGGGCTCCCTGTGTCACGTGATCCACTTGAGGTTTTCTCCATCGTGTTCATCAACACGcagcagcaggccgTGCAGGTCTCCAGCCCTGACGGACCACACAACAGCACCTATAGGTCCTCTCTGAATCCTCGGCAGCTGAAGAACTGGGGATCCTGTTTATTCTGGGCCAGTCGAGTCAACAACAAGCCGAAGCAAAGAGCCCAGGTGGTGAGGGAGCCTAAAGTTACCACAGTTCCCCAGGACTGCAGATCTGATACTCTGCATGTCAGGCCCATTGCAGCCCTGGAGATCCATAGTTCCACAGGTTTTCCAGATCCGGTGACGGCTGTGTTTGACGTCAGTGAGGTGCGGAGGAGCCAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17454 lncRNA downstream 143836 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 161579 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 365878 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 367718 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 374789 23934166 ~ 23934467 (-) True G14013
TU17560 lncRNA upstream 12486 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 101706 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 230234 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 230234 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 278240 24601698 ~ 24602007 (-) True G14213
AMCG00016533 mRNA downstream 4942 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016527 mRNA downstream 39005 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016528 mRNA downstream 59679 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016526 mRNA downstream 65881 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016525 mRNA downstream 95597 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016530 mRNA upstream 14986 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016532 mRNA upstream 32453 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016535 mRNA upstream 48611 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016534 mRNA upstream 52409 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016539 mRNA upstream 224919 24548377 ~ 24550125 (-) True AMCG00016539
TU17295 other downstream 609001 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 853445 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4173709 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 5203875 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7448077 16858541 ~ 16861179 (-) False G12945
TU17725 other upstream 557690 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 687883 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 688906 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 757110 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 950206 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile