RNA id: TU17551


Basic Information

Item Value
RNA id TU17551
length 1871
RNA type TUCP
GC content 0.50
exon number 7
gene id AMCG00016531
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24309256 ~ 24323458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNAAACAAATATGGCCGCTTGCACTCGTCCCAGGGACCGTATTGACAAAGCTCCCTGGCATGCATGGACACGGGATAAAATGACTGCAGCCCACAGGGCAGGCTCAGGAGTATTTAAGGAGTGCATAATGGACAGACCCCTGGTTCGGCTCAGTCAGGTCTCCAGGCAGCAGTGGCAGTGTCGGTCTATAGACCTGCGGGAGCCAAGACCCCCCACAGTGGAAATCCTTGGGGAAAGAGCAGCTTGATCTTTTCATAACCAGCCTCATACATTATGTCTCTGTGTTGGCGTTCTTGCGCCCCAGAGGGAGGGAAGGTCTGCCTCTCTCCCGTCAGAGTGGCCCGGCTATCTTGGTCCTGGGTGGTTAATATACAGCCGCTGGGAGCTGGTGTGTCTCCTCTGCCcactcagacagacagctcTCACGGGACCTGGTGACCGCGTCCAGGCTGGCCTCAGAGCTGCAGCCCAGGGTGAAGCATGTGGGCCCCTGGAGAGAGCGAGCCCTGAAGAACCAAACAGGTGACTTTGACCAGGACCTCATCACTTTAGTCCACCAAGTGAAAGAGAACTACTTCAGGCACGATAATCTGACTTTGAACGAACGCTTCTCCAAGCTGCACTACTCCAAGAGCTTCAGTCAGGAGGATGGGAGACGCTACTCCGGCTTGAAGATTAGCAGACAGATCGAGTTGCCGTCGCCGAACCACAAAGAGATGAAACCCGTGAAGAAAATTGGACCGACGCAGCAGAGCAGTTTCCACTCTGGCAGTCCCAATCATAGACCTGCTCACCTCATCAAGAATTCTGTTGTGGAAAGCCCTGGACACTTCCGGCACTTCAAGAAGCCCCTCATGGGCAGCCTGTCTCTGCGGCTCGGGGTGCAGCAGAAGCCTGTGTTCAAGAAGAGCCTGAGCATCCAGTCTAAGTACAGGAACCTGCAAAGTCTGCGGCAGCGCGGGCCACACGGCCGGGGGGCAGGGTCCCGCCGCTGGTGACCGCTCTCCTGACATTCAGGAAGAACTTGCCATGCCAGAGGACATAGGGACCCTGTCGGGGGCCCGTCCAGGCGCTCGCTGCGCTGGGACACTCAGTCCTGCTCCGTCCTGTCTCCAGCTGCtgaacatgttattttaaatgaaatagaaaTTAGGTCTGAACTGCACCCTGTGCACACGAAGAATGGAAACTCAGAAGTGAGGAGAGCCTCCTACAGAGTAGTGACAATTTCTCCTGTAGTGAGCGCCACCATGCCTTCTACACAGGGCCGTCTCCTGCTGCTCTATATATGTAAGATGGGGCTCCCTGTGTCACGTGATCCACTTGAGGTTTTCTCCATCGTGTTCATCAACACGGTTTGAAAAAGGATTTTAAAGGAGTTTTGGCCAGATGtttcactgttttgtttgtttttggttcttCCCTTCCTGGGCTTTCTAGATTGTGGATAAATTTGCTGtacacagctttttaaaatagtttaaaaagtcTGATTGTTAAACTGAAGTTCACGGTGTTCGTGGATACGTTTTGTCacctgtgtgttgctgtgtctgTTGGACTTTTGAAGAATGTAATAGTTTTCTAAAATGCTgttcctattaaaaaaaaaaaacacaatgatgtGCATTTCAAATTTGGCAAATTTCAGTGAGAAGCAGTTGGTTCTAATGTAATGTTTCCCTGAAAGCTTATTTCTAGAGGATTGGATGACCCACATGATGTCATCGAAGGAGCTTCCGATATTTGCAACACAAGACTAAACTATTCTCGGAAGAAATGATGCCCTTTGGAAACAGCCACTGTCGGTATGATCAGTGCAAGCCAAAACTGTGTTAGTCAGCTAAATAAAACTTCTTTTGTTAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17454 lncRNA downstream 145617 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 163360 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 367659 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 369499 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 376570 23934166 ~ 23934467 (-) True G14013
TU17560 lncRNA upstream 19142 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 108362 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 236890 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 236890 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 284896 24601698 ~ 24602007 (-) True G14213
AMCG00016533 mRNA downstream 6723 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016527 mRNA downstream 40786 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016528 mRNA downstream 61460 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016526 mRNA downstream 67662 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016525 mRNA downstream 97378 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016530 mRNA upstream 21642 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016532 mRNA upstream 39109 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016535 mRNA upstream 55267 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016534 mRNA upstream 59065 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016539 mRNA upstream 231575 24548377 ~ 24550125 (-) True AMCG00016539
TU17295 other downstream 610782 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 855226 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4175490 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 5205656 19091239 ~ 19105381 (-) True G13367
TU16025 other downstream 7449858 16858541 ~ 16861179 (-) False G12945
TU17725 other upstream 564346 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 694539 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 695562 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 763766 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 956862 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile