RNA id: AMCG00016532


Basic Information

Item Value
RNA id AMCG00016532
length 591
RNA type mRNA
GC content 0.66
exon number 5
gene id AMCG00016532
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24355911 ~ 24363038 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAGCAGGTTTGGCAGTTCTGTGGGCAGGAACCTCTTTCTGCAGGACTGCGGAACGAGAGCAGGAGGCGTTGTTGGGCTGCGGGTGAACGGGAACGCCCGGGGATCCCCGCGCAGCCTCCCCCCCCAGCCCAGCGTTGGGAGTGgaGCATCCATGGCCCCAGCGCGGGTGGAAGACAGGAGGATCCAGACCAATGGCCACGCCTCGCCCGTCCGGCTGCCCCCCGCCCCCAGCAGCCCTGCAGGTAAACAAAATGTGGACGGGTGTTTGAAGACAGACGACAGAATGCGGCTGGccaaggagaggagagaggagcgGGAGAGGAGTCTGGTGATGCGGGAGCAGGCGATCCGGGAGAAGGAGCGGCGCGCGCGGCTGCAGTACGAGCGGCAGGTGGAGGAGCGCTGGCGGCGGCTGGAGGAGCAGCGGCAGCGGGAGGAGCTGCGCCGCACAGCCGTGGAGGAGAAGAGACGCCAGAgactggaggaggagaagCTGAGGGCAGATCAGAGCAGAGCCAAGGGGCCCTGGGAGACTGAGCTCATAGTACTGGAGGCAGctatagtccagtccagtccagtccattgA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17560 lncRNA downstream 19084 24335944 ~ 24336827 (-) True G14171
TU17454 lncRNA downstream 190491 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 208234 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 412533 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 414373 23941318 ~ 23941538 (-) True G14015
TU17574 lncRNA upstream 62126 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 190654 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 190654 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 238660 24601698 ~ 24602007 (-) True G14213
TU17615 lncRNA upstream 243070 24606108 ~ 24606321 (-) True G14214
AMCG00016530 mRNA downstream 1712 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016531 mRNA downstream 32453 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016533 mRNA downstream 51597 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016527 mRNA downstream 85660 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016528 mRNA downstream 106334 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016535 mRNA upstream 9031 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016534 mRNA upstream 12829 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016539 mRNA upstream 185339 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016538 mRNA upstream 191169 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016546 mRNA upstream 358151 24721189 ~ 24739122 (-) True AMCG00016546
TU17551 other downstream 39109 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 39109 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 655656 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 900100 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4220364 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 518110 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 648303 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 649326 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 717530 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 910626 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile