RNA id: AMCG00016533


Basic Information

Item Value
RNA id AMCG00016533
length 483
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00016533
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24290694 ~ 24304314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTCCTCCGCAGAGCGCCCACTGGGTCCGCTGCCGCTGCCACCGCCTGTGGGATGCAGGGCGAGCGTGGAAGCCATAGTGGAGTTTGACTACCGGGCCCAGCACGATGACGAGCTGACGATCACAGTTGGCAGCGTCATCACCAACATCAGGAAGGATGATGGCGGCTGGTGGGAGGGCGAGGTGAACGGCAGGAGGGGCTTCTTCCCGGACAACTTCGTCAGGGAAGCTGTGGTGAGCATGGCTGCTCTGGGCTCGGCAGCGTCAGTGGTGTCAATCGTACCGAGCAGAAGGTGGGAGCCGCGGCAGGGTGTCCGTCTGCGTGCCTTGCGGTCTCTGCTGGCACATCGTGAAAACATCTCCAGCTGTGAGCTCACTGGGCACCACTCCTTGGCCAGTCCCCTTGGCAGCGTTCATGTTGAAAttgggcagagagagacagagaggggggaaaCCTTGACCAAGAGTAGCACAGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17454 lncRNA downstream 125274 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 143017 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 347316 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 349156 23941318 ~ 23941538 (-) True G14015
TU17358 lncRNA downstream 356227 23934166 ~ 23934467 (-) True G14013
TU17560 lncRNA upstream 31630 24335944 ~ 24336827 (-) True G14171
TU17574 lncRNA upstream 120850 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 249378 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 249378 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 297384 24601698 ~ 24602007 (-) True G14213
AMCG00016527 mRNA downstream 20443 24250117 ~ 24270251 (-) True AMCG00016527
AMCG00016528 mRNA downstream 41117 24247182 ~ 24249577 (-) True AMCG00016528
AMCG00016526 mRNA downstream 47319 24215947 ~ 24243375 (-) True AMCG00016526
AMCG00016525 mRNA downstream 77035 24197885 ~ 24213659 (-) True AMCG00016525
AMCG00016522 mRNA downstream 149080 24123436 ~ 24141614 (-) True AMCG00016522
AMCG00016531 mRNA upstream 4942 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016530 mRNA upstream 34130 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016532 mRNA upstream 51597 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016535 mRNA upstream 67755 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016534 mRNA upstream 71553 24375867 ~ 24392855 (-) True AMCG00016534
TU17295 other downstream 590439 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 834883 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4155147 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 5185313 19091239 ~ 19105381 (-) True G13367
TU16027 other downstream 7429515 16858541 ~ 16861179 (-) False G12945
TU17551 other upstream 6723 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 6723 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 576834 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 707027 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 708050 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile