RNA id: AMCG00016534


Basic Information

Item Value
RNA id AMCG00016534
length 5711
RNA type mRNA
GC content 0.50
exon number 19
gene id AMCG00016534
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24375867 ~ 24392855 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAACAGTGTGGGAGCTGTCAAAACTCAATCCTCGCCTGGCAGGAGGACCGTGCGGTGCTGCGCTGCTCTGCTCCGCTCACTGCCTGGCTCTATGGAGGCCCCGTAGCCCCCGGCCTCTCTTGCGCTGTAGCCCCGCTCTTGCAGCTCCAGCCCCCACTCCCACCTGGCCTTACGTGTGCCATCTATCTTTGCAGGATGAAGGGAACGTGAAAGAGATCGCCATCACCCACCATGTGAAGGAGGGCCATGAGAAGGCCGACCCCCGGCAGTTCGAGCTCAGGAAGGTGCTTGGACAGGGCTCATTTGGAAAGGTGTTCCTGGTGAGGAAGACCACGGGTCCTGACGCTGGGCAGCTGTACGCCATGAAGGTGCTGAAGAAGGCAACACTGAAAGTTCGGGATCGTGTGCGGACAAAAATGGAGAGAGACATCTTGGTGGAGGTGAACCATCCCTTCATCGTGAAACTGCACTATGCGTTCCAGACGGAGGGGAAACTGTATCTCATCCTGGACTTCCTCAGAGGAGGGGACTTTATTTTGCTTGACGAAGAAGGGCACATCAAATTAACAGATTTCGGGCTGAGTAAGGAGTCCATCGATCATGAGAACAAGGCGTACTCATTCTGCGGCACGGTGGAGTACATGGCGCCCGAGGTGGTAAACCGGCGGGGACACACCCACAGCGCCGACTGGTGGTCCTATGGAGTGCTGATGTTCGAGATGCTGACGGGCACCCTGCCGTTCCAGGGGAAGGACCGCAAGGAGACCATGACAATGATCTTGAAAGCCAAGCTGGGAATGCCCCAGTTCCTGAGCAACGAGGCCCAGAGTCTCCTGCGCATGCTGTTCAAGAGGAACCCGGCCAACCGACTAGGTGCCGGACCTGACGGCGTGGAGGAGATCAAGAGGCATCAGTTCTATTCCACTATCGACTGGAACAAATTGTTCAGAAGAGAGATCCACCCGCCCTTCAAGCCAGCATCCGGCCGCCCCGACGACACCTTTTACTTTGACTCCGAGTTCACTGCCAAGACCCCCAAAGACTCCCCAGGTGTGCCCCCCAGCGCCAACGCGCACCAGCTGTTCCGTGGCTTCAGTTTCGTAGCGATCACAGCGGAGGAAGAGACGCCCCCCCTGCAGGCCACCAACGTACACGCCATCGTGCAGCAGCTGCACAGAAACCCCATTCAGTTCAGCGACACCTACGAGGTGAAGGAGGACATCGGCGTTGGCTCCTACTCCATCTGCCGGCGGTGCGTCCACAAGAGCACCAATATGGAGTACGCTGTGAAGATCATCAACAAGGCCAAGAGGGACCCCTCGGAGGAAGTGGAGATCCTGCTGCGTTACGGACAGCACCCCAACATCATCACTCTGAAGGATGTGGTTCACAGAGACTTGAAGCCCAGTAACATCCTGTATGTGGACGAGTCGGGGAACCCGGAGTCCATTCGGATCTGCGACTTCGGCTTTGCCAAGCAGCTGCGGGCGGAGAACGGCCTGCTCATGACCCCCTGCTACACCGCCAACTTTGTGGCCCCCGAGGTGCTGAAGAAGCAGGGCTACGACGCCGCCTGCGACATCTGGAGCTTGGGCGTGCTGCTGTACACCATGCTGACAGGGTTCACGCCGTTCGCCAACGGTCCGGACGACACCCCCGAGGCGATTCTGGCCCGGATCGGCAGTGGGAAGTTCTCTCTGACTGGTGGCTACTGGAACTCCGTCTCCGCAGAGGCCaagGACCTGGTGTCCAAGATGCTGCATGTGGACCCCCACCAGAGGCTGACTGCTGCCCAGGTGCTGCGACACCCCTGGATCATCAACAAGGACCAGCTGCCCCAGTACAAGCTCAACCGGCAGGACGCCCCTCACCTGGTCAAGGGAGCCATGGCAGCCACCTACTCTGCGCTGAACCGGAACCCCATGTCCCCTGTACTGGAGCCGGTGGGCTGCTCCACCCTGGCCCAGCGCCGGGGCCTCAAGAAACTCACCTCCACAGCGCTGTGACTTCTGCCGTGACCCCGaggctgacctttgacctcacTCCCACCTCCTCTGGGTTAGCCCGAGTGCAACTTCACCGGCTGGACATCACCCCCTGCGCTGCGcccccccccatacacacacacacacacacacacacaaacctcttcttctgctgctcCGCGCAGGCTGTGGCCCCCCCACGGCCTCCTCAACGCCAAATACAAGAGTGGACTGCAAAATTGACACTCCCGCCCCTACACCCCTGCCCGTCCCATACGGACTGGACAACATGCGCTGGTACAATCACTGCTGTCTCCAAACTCACTGGGCTCTTCTTCCAGGCTTCTTTTTAGGGGAGGAAACTGTACTGTAggatttgggatttttttttttgttcagatttGTTAGGAACAATTGAAATATCTACATGCAaacattatatactgtataagaaatgtataaatgcgTATGTATTAACTCGAGATTCACTATAGCTTATGGAGTCCTCTTACTGTACTGCAGTTTAGTCACTGTTTTAGATCCTGAAGGCCCGCTCCGCAGCTGTGAGGATAATCGGCAGGCGATAGGACTGAGCAACGGTGGATTGGATTGGCCCATAATCCTCCCAGACTGACGACACTGCTGCCACCCTGCCTGGCGCCGTGCAGACTGTGAGTGCAGCAGCTGTGAGGAGGAAGATGAATCCTCACGGTCGCAGCTCGCAGCTCTGACtcttgtgcaaaaaaaaaaaaaaaaaaagggaaaatgggCAAAAGCTTTGCACGTGAGTTGGCGATGAGACGAGCTGCCATCCCCGGCTGCAGAGGCCAGGGCCTGCGAAACCTTAAAGCACAGTTTATAGAAAAAAGTGGTGCATCTTAGTGTTCCTGCTCTACACTTTTTCCCGTTTTATTTTgcagcaggttttttttgtttgtgggtTTTTTCCGATACTGCTCACCACGAAGGCGCCGTGTGATCGGAGGAGCCCCATCCTCAGTGGGAAAGATCGATGTTTTAAGCTTGCGAATATCTCAGGAAGACATTTTCTCGTAGTGTGACTTCATCCCTCCGAGACCGCCTTGCACACGAGACCTTAAGAGTCTTTTAACGAACACCCAGGCAGCATCCACGAGTCTGGCCTGCTCGGAGGCTCTTGTTTCCCCAGTACGGTTGTCTTCTCAGCAGCCAGCATGGCCCCCCGCGGCTTTTGTCTCTGCATGTCGTTCAGAAACgcaccctgtctccctctcttctgGTCTGTCTCTCCATGGCTTCAGTGAGGAAACCGCAGTGGGGCCCAGCACAGACTGGAAACTTGGACTCTATAGTggtgtcctctctctctctctctcactttctctctgtctcttgctctctcacGTGCTCTCTGGCTCTCTGCCTTCGACGCTCCCTTATTGGTTGTGGGCTTCGGTTCGGAGTTCCAGGTTCAGAGTGGCGGAGGGTATCTCTGTAGTGCTGAGGCCATGGTCCCACATACGGCGCAACAAGTAGGTCCCTCCGAGTGCCTCAGTCCTGCTCACATCAGGGGTCTCGATTAACCCTCTGCTGCGTAAGACCGGCGTCTTAAGACACTTAAGACGCTGTTCATGCTAAAATCATAGTGAGAAGCCCAGTAGTGATGTAGACCAGAGCGGACCGACCCCTGGAGTAAAGATTTGGGACTGTAGTAGTCGACCCCAGGATTACATTCCGCCCTTTCTAGAAGAGCCCCAGAGATCTGCCTCGGCTCCAAAGAGCTGCCTCGGCACACACACTTACACCGTATGGGCTCCGAGCGTGCATCGGACCGGCTCAGGTGACACAGAAAAGTCTTCACTATggcaatacaaataaaggactgtatttttttaagtgtaggGCTGAGGTTTCTCTATGTAACACGCTTATACTTGGGTACGAGGGCAGAAGAACCATCGTAGCCAGGAGGTTGTGAAAGAGGGAGGTGGGGAGTAAGCCAATGCTCTACAAAAAACTGATTTCAGTTcttggttttatatttattatgattattattttaatatttttttttataatgtttcctGGGAAGTAGGAGTGATCGGGGGGAGTGTGGGTAGCTGATCAGAGGAGTGCCAGCGTCTGCAAAGGCATCGGGGATACCAGCGGCGCTCAGAGGGTGGGCTCCATTGACTCTGATCCCAAATTCCTTGCAGtaccaaattatttttaaaaatacacacacaaaaatatatatatatttacagtattttcagatttgttttatttttaaaccctgaTCGGTTTTCCTATGTTATAAAATGAgcgtttgtgtttctgtttgacCTTTTCCGTTGTGTGTGGAAGCCAGCCTGTGTCCTGTGTGCTCCTACTTCTCAGCACTCGAGCAGCGGTGCAGCTCTGGGAACTCAGCTCATGTATGTGTAAGAGACATCAGTGGAGGGCTCTTGACAAGTGTCTGTTGAAATATCCATTGAATGTACtacttgcaaaaataaaattttatatatatatatatatatatatataataagaagCGTATATGAGCACATTGTACTGCCTGCTGAGAAGGGGTTCCACACAGTCCTCTGTCCTGTAGAgagcagcatgtctttggggAGAAGGTGTTTGCCATGCGTCTCATCcttcctctgtgtctctgtctctgtctatcgctctctctctccttctctgtctgtctgtttgtctgtctcatTATTACAGAAGCTTTAGCTCTTTGTGCCGTTATCTTCAGGACCTGGGCCGGACTGCTGCTGTCAAGGACCCTGTTATCCTGTACTTCAGCTTTATCTTGTTCTCATAATTTAAcgttaagaaataaataaataaataaataaagggatgTGTAAAGATGAgggatgtaattatttaaagaaaaaaaaatctactttcaattacatttttaagaaaaaaaatgaaaagctcagatgtattatttttatatacttcTATAAAATCAGACTTTCtacttgttttgttgtgcatGGATCGTGGGGTCGGTGTGTTTGGCTTGGGTGTTTCTTATCCCTCCATTGAGGAGTtggttgttattaatattattatgataatgattgTGATggctattgttttgtttttttgccggGAGGGCGCACACAGAGCACTGTCGGTTTACCCTCATCCCTCAGCTGTCAGTGCTACTGGGACAACAAACATTGTGCTTTGCTGTGAGGGCGAATATCTGGGTTGCTTTGATCTTAGAACgtcaattttaattttttttcctgttttcaaattttaaaaagcactggAAAATGTTCCTGTGCTTGTGATTCTCAATCCACTAGGCAGGTTTGTTTgactttatttgttgttgttttgttttttgtaatctttggaaaaagaaaactaaaatttatatgaatacaaatttccaatgtataaaataaaatcaaaaaagcAGACTGGGTGagaaacttttttcccccatcacGAATCTCCCTCATCTCTATCTTAAAAAATGGTTCTGCATTTTTCACTTCCCTCCCAGAAGCTGTGGGAAGCttaatcataatcatgttcatttCACTTCTTTGGCCACAAGAAACATCCAGACAACAGATGCTGGAATATGAACATGTTCTCCTGAAGATCCTCAGAGCACCAAGCAGCTCAGAAATAGCCATCGATATATaatgtctgtgtgtgtaaagcCATCTGAGCGGCCGAGTCGAAGCTCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17560 lncRNA downstream 39040 24335944 ~ 24336827 (-) True G14171
TU17454 lncRNA downstream 210447 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 228190 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 432489 23942044 ~ 23943378 (-) True G14016
TU17360 lncRNA downstream 434329 23941318 ~ 23941538 (-) True G14015
TU17574 lncRNA upstream 32309 24425164 ~ 24425498 (-) True G14181
TU17593 lncRNA upstream 160837 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 160837 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 208843 24601698 ~ 24602007 (-) True G14213
TU17615 lncRNA upstream 213253 24606108 ~ 24606321 (-) True G14214
AMCG00016535 mRNA downstream 60 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016532 mRNA downstream 12829 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016530 mRNA downstream 21668 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016531 mRNA downstream 52409 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016533 mRNA downstream 71553 24290694 ~ 24304314 (-) True AMCG00016533
AMCG00016539 mRNA upstream 155522 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016538 mRNA upstream 161352 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016546 mRNA upstream 328334 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016545 mRNA upstream 369714 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016550 mRNA upstream 397293 24790148 ~ 24800194 (-) True AMCG00016550
TU17551 other downstream 59065 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 59065 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 675612 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 920056 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4240320 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 488293 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 618486 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 619509 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 687713 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 880809 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile