RNA id: AMCG00016536


Basic Information

Item Value
RNA id AMCG00016536
length 3047
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00016536
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24569128 ~ 24580184 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGTGTACATCGGCCCCGGGTTCGTTAGAGCGGCTTGAAAACGGCATGGCTGCGAAACTGAGTGAGGATATGAAGTAGCTAGAACTGGGTGTTTCTGTCAGGCAGTAGCGAAAACAGAcccgtctctctccctgtcagcCGCTGCGATGATCCCTATCCCGGTCGTGGTGGTCGTCCTGGGCGGCTGGTGTGCGGTCTACCTCGCAGACACTTTACTGAAGTCATCGAGCAGCCTGAAGACCTCATATGAAGGCTGGCTGTCCTCCAATGGCCTGAGTCTGTCTCCCTTCCACGTCCGGTGGCAGACTGGCCTCTTCAATCGCCTCTTTGCCAAATGGGGACACTGGAATCCCCAGTTCCTGCTCCGCTGGTTTAACATGGGTATGGTGTTTGGAGTGCTGGCCATGTTCGGCTCCATCGTGCTGCTGGCGAAGACGCTGATGCAGACTCTGTCGCAGATGATGTCCGAGAGTCCAGAGGGCTCCAACGAGCAGGTCCTGCAAGTCGTGGTGCCCGGCGTCAACCTCCCTGTCAGCCAGCTGGCGTACTTCTTCACCGCCATTCTCATCAGCGGTGTCATTCACGAGTTTGGCCATGGGGTGGCAGCAATCAGGGAGCAGGTGAGATTCAATGGCTTTGGcatgttcatcttcatcatcTACCCCGGGGCATTCGTGGACCTGTTCACCACTCACCTGCAGCTCATCTCTCCGGTGCAGCAGCTGCGGATCTTCTGTGCCGGTGTGTGGCACAACTTTGTCCTGTGCGTGGCCGCTCTGAccttcctcctcctgctgccctTCTGCCTCTTCCCATTCTACTACACCGGTGCCGGGGCACTCATCACGGAGGTCGTAGAGGACTCCCCAGCCAGCGGGCCGCGGGGGTTGTTCGTTGGCGATCTGGTGACCCGGTTGGAGGACTGTGCTGTGCGCGGCGTGGAGGACTGGCACAGCTGCCTCAAGGACATCTCGCACCGGGGACAGACAGGGTACTGCGTCAACGCGGCCTCCATTCAGCATGGCCGCGGGAACAGCAGAGGATACAGGAGGCTGGACGGCAGCATGGAGTGCTGCAGCAACAACAGCCTGACTGACGTCTGCTTCTCCTACAGCAACAACCTGGAGAGCCGGCTGTTCGCCTGTCTGCCGGCCAGGAAGACCATCGAGCTGAGCCAGACCTGCCGCTCCAACACGGACTGCCAGAAAGACTTTGTCCCCAGCCTGTGTGTCTTCCCTTCCCTGGAGAACCAGACGCGCCTCATCCGGGTGAAGCACCAGCCCCAGGGGGACATGCTGTTTGTGGGGTACCCGCTCCACCTCCAGTATGCAGtgAGTCTTACCAACTTCGTACCTCGCTATGGATTCCTCCACTTCGACCTGCCTGTAGTGATTGAAACCTTTTGCAAATATCTGGTTTCCCTCTCGGGGGCACTGGCTGTCATCAACGCCGTGCCGTGCTTCGCTCTGGATGGCCAGTGGATGCTGAGCTCTTTCCTTGAGGCCACCCTGAGCTCCCTCATCGTGGAGAAGCACAACCGGGAGCTGCTGGGCTTCTTCATCCTGCTGGGGGGCAGTGCCCTCCTGGCCTCCAACGTGGCCCTGGGCCTGTGGATGGTCACGGCTCGGTAGCGTTCTGCTTTCTTTGAAGCGAGGAGGACAGTGGAGGGTTCTCTTCTGGTGTCAGCAGGAGGACATTGGTTTTACTCGCACTGTACAGGAAAGACCGATCCAGGACCTTGTGCCAGTGTTTCGGGGTTGTCGATCTGTAGCCACTGGTGCCGCAGAGAGCAGGGCCTCGGGAGCTGGGGCAGCCCGGCGCTCCGTGGCAAACATTCCCAGTGTGCCCCTCAGCCAGCTGGCTGCCACTCGCTCACAGGGGCTCTACACAGCTGCTAAACCACACGGTGTCATCGCAGTTCTCTCTCCAAGCTGTCGAAAACAGGCTCGGGCCAGAGACCTGCTTATTTCATTTGTGCCGAGAGTGCGTCACAATATGGGCTCTGACGGGCCGAGACTGGCACCTTTTCACAGAGAGTGTTTGTTCCCAACATGGTTCcattttgttattatgtttttatgttttttttaaaggggatAATGATGACtggttctttttatttatgattttttttttttttttatatatatattttttaaactttcccACGTCTAACCAGACTTGTTCTGTTACAGCTGTTCCCACGATCACAAGTCGCAGGTTCGTCCCCCCTCCCAAGCTCAGAATGCCAGGTCTGGCATCTTGCTCTGCGACAGTCCCTAGACAAGTTGCCTCCAGTACTGGTCGTGGAGAGCCtgtatccagcaggttttgtcACCCTTCTGTCACACATTTTTAGAAACCTgaaacaattaagcaggtggtaAATTTGGTCATTTAGAAACTATTGGAGCATCATCTGAATACCTTCAGATTCCTGTAATTCCCTTGCctgacttgcttaattgattaataactcccatgtgttcccagtatttagaaatgggtgatttaaggtgacctGTAAGATGAAGAGGATTGGggcactccaggaccagggttagagACCCCTGCCCAAGAGCCATGGTCAGGACACTGGCGCTGTGGAGAGCTGAGCTCCGTCTTTTACTTCCTCCGGTGCTTGTGTCTGCACTGTCGATTCAGGCATCACCGCGGTTGTGTCCTGACCATCGCCGTCCACACAGCTGTGCACGCTCCTGCTGGGATCCACCTTTGTGCGGAGAAGAATCGAGCCACATACCAAAGGGGTTCTTTAAAAGGAAATCAAcattatatgaataaatacatgaaattcaAGAATATGTAGAATAGtcttaaaagaaaatctcaatTGTGTTTAATGTCCTGTTGTTGGGGTAGCTGAAGTCATCTGTAAGTGTTCCTTTAGAGCTCAGTTTACAGTCCAGAGACGTGAAGTGGAGAGACCACATTCTCGCACTGATCCTGTATAacgtgcttttttttttttttttttttttttacttatctTTTTACTTAttccaaaacacagaacatgaaaacaata

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0051216 cartilage development biological_process
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K07765 MBTPS2; S2P endopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 149521 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 193301 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 193301 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 194097 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 230280 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 503589 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 541899 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 564398 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 689654 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 777703 25357887 ~ 25359035 (+) True G14444
AMCG00016537 mRNA upstream 26329 24479706 ~ 24542799 (+) True AMCG00016537
AMCG00016529 mRNA upstream 232301 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016519 mRNA upstream 450755 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016520 mRNA upstream 467563 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016515 mRNA upstream 491842 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016541 mRNA downstream 1793 24581977 ~ 24597847 (+) True AMCG00016541
AMCG00016542 mRNA downstream 21516 24601700 ~ 24617531 (+) True AMCG00016542
AMCG00016540 mRNA downstream 89028 24669212 ~ 24683200 (+) True AMCG00016540
AMCG00016547 mRNA downstream 120561 24700745 ~ 24712231 (+) True AMCG00016547
AMCG00016543 mRNA downstream 132148 24712332 ~ 24719584 (+) True AMCG00016543
TU17581 other upstream 7321 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 458946 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7447196 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 8083125 16484355 ~ 16486003 (+) True AMCG00016329
TU17758 other downstream 427778 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 553014 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 570299 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 570299 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 570299 25150483 ~ 25157461 (+) True AMCG00016566

Expression Profile