RNA id: AMCG00016537


Basic Information

Item Value
RNA id AMCG00016537
length 2964
RNA type mRNA
GC content 0.60
exon number 21
gene id AMCG00016537
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24479706 ~ 24561807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCAGCCTGTCACCAAAAGTCAGCACTTCTGCGGCTCTGAAATGGCCCTGCTGCTATGGGTGGAGGAGGTCCAGCACACTGAGGGGCTGGATGACTGTCTGCAGCAGTACATCAAGAACTTTGAGCGGGAGAAGATCAGTGGTGACCAGCTGCTGCGCATCACACACCAGGAGCTGGAGGACCTGGGCAACTACGGTCTGGAGACGGAGAACCTGAAGACCCTGTCCCACAAGCTCAACGCCTCGGCCAAGAACCTGCAGAACTTCATCACGGGCCGGCGGCGGAGCGGCCACTACGATGGCAGAACAACCAGGAAGCTGCCCAATGACTTCTTGACCTCGGTGGTGGACCTCATTGGGGCAGCCAAGAGCCTCCTGGCGTGGTTGGATAGGTCTCCCTTCGCAGCCGTGACTGATTATTCTGTAACAAGGAACAACGTGATCCAGCTGTGCCTGGAGCTCACGACCATCGTACAACAGTGCAAGACTCTGTCCGGAGTGTGCGACCACATCATCTCGCTGTCCTCCGACCCCCTGGTCTCTCAGTCCGCTCATCTGGAGGTCGTGCAGCTGTCCAACATCAagcccagcgatggcctgGGGATGTATATCAAATCTACCTACGATGGACTGCATGTAATCACTGGAACAACAGAAGGCtctcctgCAGATCGGTGCAAGAAGATTCACGCAGGGGATGAAGTCATTCAAGTTAATCATCAGACTGTGGTGGGGTGGCAGTTGAAAAACTTGGTAAACGCACTGCGTGAAGACCCCAGTGGTGTGATCTTGACTTTGAAAAAGCGACCTCAAAGCATGCTAACGTCTGCCCCGGCTTTACTAAAGAACATGAGATGGAAGCCCCTTGCATTGCAGCCGATCATTCCTAAGAGCCCCACCAGCAGTGTTGCCACCCCCTCCAGCACAATCAGCACCCCCTCCAAGCGAGACAGCTCTGCCCTACAGGACCTGTTCATCCCGCCACCGCCCTCAGAGCCCTACACACCCAGGTACAGAACCCCTCCCAGGGACGAGAAGGGGAACCTGCCCAGTGACGATGTGGGCCGCCACCACACTGGCATCCCAGTGGCCAAGGGCTCCGAGTCGCCCAACTCCTTCCTGGACCAGGAGTACCGGAAGCGCTTCACCCTGCTGGAGGAGGACACAGTGCTGTACTGCTACGAGTACGACAAGGGCCGGGGGGGCGCCCCCAGCCGCCGAGATGGCACACCCACCTATGCCAGGGCTACAGGTTCCCAGGGCCGCCATGAGCCTCCTCTCTCACCCACGTCTGCTCTCTCATTTCCAGGCAGGCTGAGGCCCATCTCCATGCCGGTGGAGTATAATTGGGTGGGTGATTACGAGGACCCGTCGAAGCTAAAGAGGGAAGGAAGGCGAGAGAACTCCCTCCTGCGGTACGTGAGCGAGGACAAGGTCCCGCCAGAGGAGTACATGACCCAGCGCAGCAGCAAGCGGGACACGGGCAAGAGGTCCAAGAAGAAGGGCGAGAAGGGGGGCAGCCCCAGCCACTACGCCCTGCTGCCCGCCCTGCAGATGGAGGTGCTGAGACAGGAGTCCCTCTCTACGCCCAACCCCGACTCCTCGCTCTACCACACCTTTCAACAGTCATCACTGCATCATAAGtccaaaaagaagaacaaagCGACCCCGGCTTCCATGAGCAAGAGGCGGATCTCGTGCAAAGACCTGGGCCGCGGCGACTGCGAGGGCTGGCTGTGGAAGAAGAAAGACGCCAAGAGCTACTTCTCGCAGAAGTGGAAGAAGTACTGGTTCGTCCTGAAAGATGCCTCTCTGTACTGGTACATGAATGAAGAGGATGAGAAGGCAGAGGGCTTCATCAGTCTTCCAGAGTTCAAGATTGACAGAGCCAATGAGTGCCGCAAGAAATACAGACTCAACATGGCGGCGGCAGGGTACGCGGAGCGCGAGAGGATAAAGCAGGATCAAGACTACTGGAGCGAGAGTGAACACGAGGACAATGATACACCTTCAACCCCCAAGCAGGATAGCCCTCCGCCGCCCTACGACACCTACCCCCGGCCTCCTTCTTCGCACTCGTCGCACGAGGAGTTCCGGCACGAGCAGACGGACCGCAGCAGCACCGACTCGCCGGTGCGCAAGTCCGCCAGCCATCGCCGCTCCTGGCAGGACCTGATCGAGACGCCGCTCACCAGCTCGGGGCTGCACTACCTGCAGACGCTGCCCCTGGAGGACTCCGTGTTCTGCGAGTCGGGGGGCTGTGGGGGAGGAGTGTCCGCCGTGTCCCCCGAGCAGCGTCGCCAGTCCACCCTGCCCGCCCAGCGCAGCCTCCTGCACGACCACTACGGTCCCTTTCCCATGCCGGAGGGCGAGCGGCTGCGGGAGCTGGGTGGCGGGGGCGGCAGGGGCGGGGGGAAGCCGCGAAGCTTCACGCTGCCCCGGGACGGCGCCCTCAGCCACGGCTGCCTCACGCCCTCCATCAGCGCCTCCGAGTACAGGGACTGCGCCCGCCGCAATGCTGGGAAGCTGCAGGACCAGGAGTCAGGAAGTGAGCGGGAGGAGGAGCGAACCGGCGACTCCCTCAGGGACCTGTACCGGGCCCTGGAGCGGGCCAGCCTGTCCCCGATGGGAGAGCGCCGCCTGTCAACCAAGCTGGAGTACAAGCGCTCGTTCATCAAGCGCTGCAACGACCCTGTCATCAATGAGAAGCTGCATCGCCTGCGCATCCTCAGAAGCACTTTAAAGgctagagagggagagatagccATCATAGACAAGCTGCTGGACAATCCCAAGCTGACCTCCTCAGAATTTCAggagtggaaaaaaatgtaCCTTGAGCTTTTTTTAGATATCTGCCCGCAGAGTTCCAGTAAAGAACCAGCCAATGGCACCCCAGACCGGCCCTCTCCCATCCCGACACTGGCCCACACTCACTCGTACATTGAGACACACGTCTGA

Function

GO: NA

KEGG:

id description
K17536 CNKSR2, CNK2, KSR2; connector enhancer of kinase suppressor of Ras 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 60099 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 103879 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 103879 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 104675 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 140858 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 540974 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 579284 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 601783 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 727039 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 815088 25357887 ~ 25359035 (+) True G14444
AMCG00016529 mRNA upstream 142879 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016519 mRNA upstream 361333 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016520 mRNA upstream 378141 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016515 mRNA upstream 402420 24073722 ~ 24077286 (+) True AMCG00016515
AMCG00016516 mRNA upstream 449750 24022414 ~ 24029956 (+) True AMCG00016516
AMCG00016536 mRNA downstream 26329 24569128 ~ 24580184 (+) True AMCG00016536
AMCG00016541 mRNA downstream 39178 24581977 ~ 24597847 (+) True AMCG00016541
AMCG00016542 mRNA downstream 58901 24601700 ~ 24617531 (+) True AMCG00016542
AMCG00016540 mRNA downstream 126413 24669212 ~ 24683200 (+) True AMCG00016540
AMCG00016547 mRNA downstream 157946 24700745 ~ 24712231 (+) True AMCG00016547
TU17415 other upstream 369524 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7357774 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7993703 16484355 ~ 16486003 (+) True AMCG00016329
TU17758 other downstream 465163 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 590399 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 607684 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 607684 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 607684 25150483 ~ 25157461 (+) True AMCG00016566

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046467 True 2050 mRNA 0.54 15 NC_007135.7 25513040 ~ 25673442 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_04418319_04451714.mRNA True 2998 mRNA 0.54 22 CI01000006 4418319 ~ 4451773 (+)