RNA id: TU17594


Basic Information

Item Value
RNA id TU17594
length 3312
lncRNA type sense_over
GC content 0.37
exon number 5
gene id AMCG00016538
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24553692 ~ 24566956 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTCCGCCACCTCCTCTAGCCTCGGCTCCCCTTCTCCTCAACTGACATCTGAGCCCCTCCCTCTGGAGCCTGGGCCCTCTGCCTCTCCCACTGCCTCTCTAGCTGCAGGAGAGACAGGCCCCTCCGTGTATCAAAGGCTATATTTAGGAAGAACAAATGCAAGTAATGAGAGGAATCCCTTTGCAAGTGCCTACCAAACTGCCTTCAGCCCAGAGAGAGCATCAGccctgagcagcagcactgttcACTCCCAGATCCAGGAGAGGCTTGTGACCCGTTCTCCTAGTCCAGCCCTGTGCGTCCAGGACTCCGGACTTCCCTGTGCAAAAATGTCCAAGCAGCCGTCATCCAACGTCAAGGCCTTGCAGGCCAACCTCAATATCCCGATGGGGGGTCTGCGTCCGGGAGTGGGACATCCTgtgaagaggagagaggagtcAGTGGAAGCGGAGGAGCACATTCCCGCCGATGTGGTCGCAGAGAAGAAGCAGCCGCAGCTCCCCGGGGCGGTCAAGCTGCCTGGACCAGCGGTCAACCTGTCCGAGATCCAGAACGTGAAGAGCGAGCTGCGATGGGTGACTAAAGACTAAGGCAACAGGACTGGGGCCGGGCTGGGAGAGCTGTTCAGAGACTCAAGACAGACTGCAAGAACTCCACTGCATTCTAACAGCTTCGTAAAACTGTCTATAAAGATGAATGACTACCTTCTATAGACCCTGAGCAGGGGCTGGCATCCCATTCAAAAGCAATTtagtaagaaaataataataataataataataataataataataataataataataataataataataataatcattgttaAATATACCAGTGAGTGGCCCATGTTTGAGAGCCTGCCCCAGACGAGCCTTtgagaaatattttttgttatcaaCTTAATCCTGCTGAAAATTGAATGTCTATTTTTAACTATTAggctataaatataattataaaaataaatatatacaaatctatATCTAACTATATATAGGGAAGTTATTCTGGTGATGTCTGAGGCACTGTAGCCCTTCACAGACACATGGAAATATGCATGTAGAAGCTTTTTGCAACACCAAACACCTCAGAGGTGCCCCAGGGATACAGTGTGGACTAAAGCTCCACAATTCCCtttcatacaaatataattttgcatGCTTAGTTAAGCTTAAATTCCTGGGAAAATACAGCCCCTATCATTTGCACACAGCAGTGAAGGTCCAGGCGTGTCCTAATTCGCCACAGACAGACTCAGAGGGATCAGGATGGTGGGCATTAACACATCcactgcctgcctgtctgcctgccttCAATATTTCCTTGGGATTGTCTGCTTACACATCAACTGCATTGTTTATAACCTGCTGACAGGAAACAAGGGGAAGATTTCAACTGCATGTTTTTTAGACTGGAGCAAAATGTAGACGGTGATAAGCAAGcaagcacactgacacactgacacactgactgactgacacactgacacactgactgactgattgactgaccgACTGTTCTACAGAAACCACATGCAATGCTTAAACAATTCACTTcttgacttttttatttactCTGAGAGATTTTCCACTTTAGGTTTGACAAACACAATCAGTGACACCCCACCTCTGGGCTTTAAGGTGTCATGCCCCCCAGTGGCTGCTGCAGCTCAGTGCTCTGTAACACAGGCTGGGCTATTGACCACGAATCGGCAACATGTGGCCCAGACAGCCATCTCCAGTGTCAGTGCCTTGTAGCTTAAAAACATCCCAGGTATTTCCAGCCCTCAGCTAAAAGCTTTCTGTGAACAGCAGGGCACTCAGAAGAAGGAATTCTCAGTTCATTGTGTTccttttattatcattactacATTTCTGTGTTTAAGCATGCTAATGTAAAGCTTATCTTTATAAGTTATAGCTGAAGAGTCGCATCCAGCTAtccctgtgttgtgttttcggCGTTACAATTTCACTGCTTGATTGTGCTGAATATTTTATCTTCactgttgtattattgttattattgcagATATTATTgttctgatgatgatgattactaTGTCACTGTTGTAAGTCCTGTTGCGAGAAGCACAGAGATATTTGTCTTTAGTTTCAGCATTTCATAGGTCATTAATTCGGGCTGGAGGTTTTAAACAAGACTCAAGTCGCTAAGCAGGATTTTCAGTTCTAATACCTGGGTGGCTGCGTACAAATACACAGCATTGAGAATGAATACTGTttcatattgtgttttattatatcaGAAATCGATCTGTGTGTAGTTTTTTGTGTACTAGAGAATGTGAAAGCAGGGATATGTTCAACTGCGCTTCTCTCTGTGCTCGTCCAGGTCCACAATCATCTCTTGCTGTACTTGCTGTAAACCAGTCATTCGTTTCTGCCCCTCAGGAGATAAAACCCTAAAAGTACGGCATCTTTAAGGTTACATGTCATTCATGCTTCAGAGCAGCAATTTGTCTCTCTACAAAGCCGGTTACCTAAGATTTAGGTAAACACATAGAGATAATATCTGGTGAATGGGGGATTGTAGGAGGTCTGATTGACTCTGTAGTGCCGATGACTTTCATTAGACTCCTTTATTAAAATTGGAAATACAAAACCGGAATTGGAATAAATCTGTTCTCATCCTGAAAGCCAGCCCACTCCCTCGGACTCCCTCTGTAAGGAGAAGTGTTATCCCCACACTGCAGAGGAGAGCGTATTGGGAAACAACCCCTCAACACAACCTGCAGCCTCCACAACCTGAGCAGAAGCTGTGAAGAGCAACGCAAGACAAAACTGAAgaatcaacacattttcagagcttttttaaattgtatttattttatttcacttctaAACCTCAGGTGTAAGGGTGGTAGTAAGGTTTGTTTACATATGTGGTGCAAGGCTGAACTATAGGCTGTGTGTCGACTTGgttatggtttaattttgttgtataaatattttcagttaGAGGTTTCTTTCAGAGGGTCCATTTGAAAGTGTCCTTAATTGTGAATTCTGGCAATATACTGTATTACATCTGAACAAGGGACTGCTGCACTGACCTTGTTATACGCATCATGGACTTTgagaaaagaataaataaaactagcTGATTTCTCAGAAACTAAACTTGTGTTTTAATCCATTCTCACATTTCTCAGGTATTTTCCTAtgttaaatcaattaatcactGAAGCAGATCTCTGCGGTGATGGAAGCTTGTGCGAACAGAGCGCACTCCACGGGAATCACACCTCCACCGTGGTGCAGTGGTCGCATTGAGCAGCTCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17574 lncRNA downstream 128194 24425164 ~ 24425498 (-) True G14181
TU17560 lncRNA downstream 216865 24335944 ~ 24336827 (-) True G14171
TU17454 lncRNA downstream 388272 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 406015 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 610314 23942044 ~ 23943378 (-) True G14016
TU17614 lncRNA upstream 35020 24601698 ~ 24602007 (-) True G14213
TU17615 lncRNA upstream 39430 24606108 ~ 24606321 (-) True G14214
TU17619 lncRNA upstream 49109 24615787 ~ 24618345 (-) True G14218
TU17623 lncRNA upstream 116387 24683065 ~ 24684535 (-) True G14222
TU17653 lncRNA upstream 150048 24716726 ~ 24780266 (-) True G14245
AMCG00016539 mRNA downstream 3567 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016534 mRNA downstream 160837 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016535 mRNA downstream 177885 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016532 mRNA downstream 190654 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016530 mRNA downstream 199493 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016546 mRNA upstream 154511 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016545 mRNA upstream 195891 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016550 mRNA upstream 223470 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016551 mRNA upstream 236058 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016552 mRNA upstream 309186 24875864 ~ 24878227 (-) True AMCG00016552
TU17551 other downstream 236890 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 236890 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 853437 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1097881 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4418145 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 314470 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 444663 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 445686 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 513890 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 706986 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile