RNA id: AMCG00016539


Basic Information

Item Value
RNA id AMCG00016539
length 1749
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00016539
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24548377 ~ 24550125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTATTTTCTGGTGCTGAGCAAGACCCATGGAGAAACGATCCTGTCACAGTACCAGCGACTGAGGGAAGATCATGCGCTCTGTGATATAGTGCTGGTGGCTGGCGGCACAGAGTTCCCAGCACACAGGACTCTCCTGGCGTGCTCCAGTGACTATTTCAGGTCACTCTTCAAGGACTACACCAGAGAATCCAAAGCCAAACTGATAAACCTGCAGGTGATCTCTTCTGTGGGACTCCAGCACATCCTGGATTTCATCTACACCTCCTGGCTCTCCGTCTCCCCGGGCACCTTGGAGGACACTTTAGAAGCAGCCAGCTACCTTCAAGTCATCGAAGCCATCGAGCTGTGTGGCCAGTATATCACCGACAACCTCAGCCCGGAGAACTGCTGCTTCTTCGCCAATGTCGCCTCCAGGTATGGCATCCGCGGGGCTTTGTCTGCTGCGAACAGATACATCGGCAGCAAGCTGGGTGAGCTGCTTCGCTGCGCTGTGGATTCCACCGGGCTTCTGGAGCTCAACTCAGAATCTTTCCTAGAAGTTCTGGATTCCGAGGAAATGCCCAGAGTCAGGGAGCTCCCACTCCTGACCCTAGTGCTGCAGTGGTTGAGGAGCAACAAGCTCTCCACTGTGAGGAGCAACCTCGTGCTGAGCAAGATCAGGTACGGGCTCATCCCCGCAGAGGAGCTCACCAACCTCTACTCTACCAACAGTGCCCTGCAAACTCCCTTCATAAAGGGCCTGATTCTAAAGGCACTGAATTACCATTCCTTGGGTCACCAGCAGCCACTGGTTCAGAGCACACAGACAACCCTCAGGAGCCGTGGTACCCAGATCCTTCTCACAGGGGGCGGCACTCAGGCTGAGGGGCTTGTGAGCGAAGTCCTGGCCTTCGACCCCTATTTCAAGAAATTCAGGCCCCTCACTGAGCTCCGGAGCAAAGTTCAGAgccactgtgtttgtgtggtagGGAATTTCCTGTATGTGCTGGGCGGGGAGGTCTTGCAGGTCAACGAGAATGAAAAGGCAGTGACCACGCTGGTCACTAATCAGGTCCACCGCTACGATCCCCGGTTCAACATATGGGTCGAGACAGCCGGGATGATTGATAGGAGGGCTCAGTTTTCGTGCTGCGTAGTAGATGGCAAGATATGCGCCATTGGTGGCAGGGGTGGGATTGAGTCGCCACTCTCTTCTGTGGAGGTATACAATATCAAGACTGACAAATGGCAGAAAGCCAGAGACCTTCCGCAGAAGATGCACGGCCAGGCCAGCTGTGTCTACAAGGACACCATTTTTACCTCAGGAGGGATGTTCGcccagcagagagagagcagcagggaTGTGTACAGCTTCAGCATGCTGGAGGATCAGTGGAAGAAGCGTGCTGCCATGTCCATCGCTCGCTTCGGCCACCAAATGGCCACCATCAAGGAGAAGATCTACACGTTCCTGGGGATGTACGAACCCTTCTGTGACATCGAGAAGTACGACCCGGTAGAGAATCAGTGGACGAGGTTGAAGCCTCTGCTGAATGACAGATTCTCCTATGGCATGGCCTTGGTGGAAGACAGCGTTCTCCTGATTGGTGGGAAGAAGTGGCACAATTCTCAGGAGGTGCCTACCCCAAGCATCCTTGAATACGATGTGGACGGAGACAGCTGGAAGGAGTTGTGCAGGCTTCCCCGTCCACTGTATGGGATGCAGTGTGCCCTCATGCAGCTCCCAGAGCCCTTAGAGACCTAA

Function

GO: NA

KEGG:

id description
K10469 KLHL34; kelch-like protein 34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17574 lncRNA downstream 122879 24425164 ~ 24425498 (-) True G14181
TU17560 lncRNA downstream 211550 24335944 ~ 24336827 (-) True G14171
TU17454 lncRNA downstream 382957 24165157 ~ 24165420 (-) True G14093
TU17453 lncRNA downstream 400700 24147399 ~ 24147677 (-) True G14092
TU17361 lncRNA downstream 604999 23942044 ~ 23943378 (-) True G14016
TU17593 lncRNA upstream 3567 24553692 ~ 24566678 (-) True AMCG00016538
TU17594 lncRNA upstream 3567 24553692 ~ 24566678 (-) False AMCG00016538
TU17614 lncRNA upstream 51573 24601698 ~ 24602007 (-) True G14213
TU17615 lncRNA upstream 55983 24606108 ~ 24606321 (-) True G14214
TU17619 lncRNA upstream 65662 24615787 ~ 24618345 (-) True G14218
AMCG00016534 mRNA downstream 155522 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016535 mRNA downstream 172570 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016532 mRNA downstream 185339 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016530 mRNA downstream 194178 24338444 ~ 24354199 (-) True AMCG00016530
AMCG00016531 mRNA downstream 224919 24309256 ~ 24323458 (-) True AMCG00016531
AMCG00016538 mRNA upstream 4082 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016546 mRNA upstream 171064 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016545 mRNA upstream 212444 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016550 mRNA upstream 240023 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016551 mRNA upstream 252611 24802736 ~ 24809912 (-) True AMCG00016551
TU17551 other downstream 231575 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 231575 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 848122 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1092566 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4412830 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 331023 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 461216 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 462239 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 530443 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 723539 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile