RNA id: AMCG00016541


Basic Information

Item Value
RNA id AMCG00016541
length 5736
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00016541
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24581977 ~ 24597847 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACATGCTCGCAGGCCCCTCCCCCGCCCGCCGCACGGAGAGAGAGCACCTCCAGCGTGTCCTCACTGTCAAACACAGGCTCCCTCGCCCTCACTACGGCTGCCTCCACCAGGCATGGCTGCGGGCTGCTTCCCATCATGGCCGTGCGACATTACACCCTCGACTTCCAGCTCTCGGAGCCAGCTGACTGCACCACCTCTGCCCAGGGCCTGCAGGCAATTTTTCAAGAGCAAGAAATGACAGAAACCTTTCACGGCACTGACGACCATGGCTACTACGCAACGTTCACTGGCAGAAATGGCAGGTTTGTTGTTCTCCGGCTGCACTCGCACGGGTTTGTGTCTGTGGACCTGCAGAGCTGCGCTGGAGACGATGCCACACAGGTGGATGACCTACTAAATGCActggaagaaaaaatgaaagttCTTTTGCACGGCAAAATTAAAAGGAGTAAAAGGCTGCCAGCCCTTCTGCGGGGGGAGGAGGTGGATCGATACTGGCCCACGGCGGACGGCCGACTGGTAGAGTATGACATCGACAAGGCTGTGTACGAGCAGGACTCGCCCTACCAGAACATCAAGATCCTGCACTCCAGGCAGTTTGGCAACATTCTCATCCTCAATGGAGATGTCAGTAagtgaacaataaaaaaaaaaaaaaaaattgcaccaGCTGCTACCAGAGTGACCGGTCTAAGAGCAGCTTCCCTTCCGCCTCCTGTAGTGACCAGGCAGCGTCTTGCAAGCCAAGTGACCCTTATCATTTGTAGGAGCTGAATTATCAGCTGGATTTCACTCCCAGCAGCCAGTGTTCTCGGTCTGCAGTGCCACTCTTGCGCACTCCCTCCATCTCTGCTGATCCCTGAGCAACGGTCGGCTCCCCGGCCTGCTTGGAAATTTCCGGCCCCCCTCTGCAGAGAGCCCCTCCCTCGAGCAGCGGGGTGTGGAGGGTTTAGCTCGAGAACGAGCGCCGGGCGGGAGAGGGCTGCTGTTCTACTCGGCGTCCCACAGTCGAAGCTTTTCAACTGCACTCTCCTGCCGGTCCTGGGGTATAACGGAAAACCTTGCCTTGATTACTGGAGGAGAAATggaatcaaatacaaaattggaAGCAGCTGcgattgttttgcttttttatcaGAGGCAAACAAATTAAGCAGTTAGATTGcaggtgtttttaaaataatataatcagatgacaatggaaataaaaaacaagcttctctcCGGCCGCTCAGTGTCAGTGCGTTTAAATGAGCAGCGCACTGGAGGGGGTTTGTTCAGGCTGCGCTGCGACAGGAAATAGCAGGGTGTAGGGCGTAGGGCTACTGTGATCATATATCATGTGCTTGAATAACTGCAAACCACAGCCAAGTATAGCCCTTTATATATCTTCTTAATCACTTGCCTTAATTATGAAATAAGGGACTGTGGGCTGAGACCAGACTTGGGCTCACATACATTTCCCGATGCTCTCTAAGTACTTTGAATTTGTAATCGGCTTTGTTTATCAAGGTGAGGGCTTTCTAGGCAGCTTGGCATGATTACCGGCCGCACTGTGCGACCACTTCAGCGCTGTCGCCGCTGCAGACGGGCTCAGACTGATTGAGTTGAATGAGTTGACTGGATTAGGCCTGCCTTCGAAAAAGCAAGGCTGGAAACAGCCTCCAAAGGACCGGTTCCAGAGGGGTTGAAAGGCCGAACGTTTTGCAATTCTACAATATCTTGTTTACCCTGAACCTGAGTGGATCTGTTGCTGCTGCCATGCACTGCAGCCCCCCCTGGTGGAAGGAACAAGACATGACACAAAGGAATTGGTTGTATCAAGACTTTATAAGGCCCGGTTTTATATCACTGTGTACGTCGATGCCACTGTCTAGCATATTGTGACAGatctgtttaatttattcttattctACACACAAAACATAGAGGACATAGAATTCTTATTCACTGTAGAAATCGTTTTTGTCCTCGCTCTGTCCCACCACCAtctccttttccctctctctgtcctacCCCTCTCAGACCTGGCAGAGAGTGACCTCCCATACACCAGGGCCATCATGGGCAGTGGGAAGGAGGACTATGCCGGGAAGGAGATCCTGATCCTGGGTGGCGGTGATGGTGGGATCCTGTGTGAGGCAGTCAAGCTGAAACCAAAGATGATCACCATGGTGGAGATTGACCAGCTGGTAATCGATGGGTGTAAGAAGCACATGCGCAAGACCTGCGGGGACGTGCTGGACAATCTGAAAGGAGACTGCTACGAGGTGTTGGTCGAGGACTGCGTCCCCGTGCTGaagaagtttgccaatgaaggGAAGACGTTCGATTATGTGATCAATGACCTCACAGCGGTGCCCATCTCCACGGCCCCAGAGGAAGATTCGACGTGGGAGTTTCTGCGGCTGATCCTTGACCTCTCCATCAGGGTCCTGAAGCCCAGTGGGAAATACTTCACACAGGGAAACTGTGTCAACTTGACTGAGGCGCTCTGTCTGTACGAGGAGCAGCTGGGCCGGCTGTGCTGCCCGGTGGAGTTTTCCAAGGAAGTGGTTTGCGTTCCGTCGTACATGGAATTGTGGGTTTTCTACACGATATGGAAGAAGTAAATCCAGTTTGTTGCTGGAGCTCCACGCTGCATGAAGCCCCTGGGAGCAGTACGCTGTCTACCAGAGCTCCGCGTTTCAGATGCACtgtaaagagaaacagaaagtaGTCTGGCtggtttttcagttttgtacatCTGCGTtataattttcttttgtatgttggattttattttatttttttcagttggtgtttgttattttgttgtgtgtagGTTGGGTAATAACGCTGTAAGTTGCTGAGCTTGTGGTTGGCTTGGCGACTCGAAGATGAAAGCTGCTGCACAGAGGGGCGGGACGTGATCTGTCTTTTCAACAGGACATTCGAAAGGTTCCTCTGTTGTTCTTGCTGTATTTGCTCAATGTACGATCTTGTGTATAGGTTAAGAAGTCACTCTGCTTTCAGacctttctttattattattttataaatgaatgttGGTTTTGATTTATGGTGCTTTCAGTGTGCAGCCAAGGAACTGGTATTAACTTGGGCTTCCAGTTTGACATTGATGCgttttaaacttgttttaaaagggaaatgttttttgtttgtttttcttccccccattCCCCTTGCTCGCTCTCCCCGCTCTGGATAGCACCTGGCCATCGATCTCTTTAGGAAGCCTCTGACCCCTGTCGACCCTGCTGGGGTCCTTGACTACACTCTGGTTAGGCCTGATATAGCAGCCTATCCTCCTGACagtaactttcttttttttttttttttcttctttttaaataaaagttccCCTCATTTCTTAGTCACACAGATCCCCTGTGGATGTTTTCCTCAGCAACACAGTGCTTTTGTCACATTCCAAGATAACTAACATGtcctttttaaacaataaaatacaatttttaaatatgcGAGAGTCGAAACCTCCAGGCGAATCACGGCAGCCGGGAGCATGGCGCCCAAGGGGGGCCCTTTAAAGGAACTGGGGGACCTCAGTTAGCAGACTGGAGGTTTAGCAGAGAGCCGATGAGCATCTCACCTGGACAGAGCAGCAGCACAGGggccagctgtgtgtgtgtgtccattgcTCTGTAAACTGTGTCTGTTGCTGTGTAAACCCTGCTGGAATATAGGTACTACATGTAACACAAGACAGCCAAGATTGTTGTtttagaagtgtgtgtgtgtgtgtgtgtgtgtatatgtctatCTCCTTCCCGCTCGAGGATGCTGCCCCTGGGCGCCTGCGTCTTGTCTTTCTCAGATGACATGTTTATCGTGCTCTTCCCCCCCGGCCTGTGTtctctgttcatttgttttataattaaattcaaagCGGTTTGAGACACTGGGATCTGTTGGTAAGAACAGGCCTGCTTACACCAGCAACCTCCAGGTGTGCTTAAACAAGACCGGGATCTGGTTTGAACATTGGATAattaagtctttattttcatttgatgtgATTTGTGTAGGGACTCTCACATAATCCTTTGCAAATTATGCGATTCATGGAGCCTTGTTTTTAAGTATGTAAACGTCTTGGTCTTCAATTAAAGCTTAGAAAAGCCGAtctaatggaaaaacaaaataaatgcaagtcttcaaaaaagtgaaattataaTGGTGGGGGGGCATAACGAGGGCTAAGTGTTTAATACTGTTAATTTTGTGTTTGGCACTGTGGCACTCCAGGCCCAGGTCTTGGCATTGAATCAGGAGCAGGAGGAGTGAACATCCCTGGCTGATTGACACGGCTGAAGTAGGGCTGTTCTGTATTTATGTCTTGTGCTTAAAATAGGCATAATGTTTAAACCTCTATTTTTGGCTTTTAAGAGGGGCGGCACTTTTTAGCCACCAAAAAGGGAGTATTGTGTGCGTTTATACATTGATGTCAAACATAATTTCATGGGCCTGGACCACTCGGTTCCCATTGATTTAAAACTGAGTggatcatttgttttctttgctcaGTTAATGAACATGATCGATGGCCTCCATGTTTTAATTCAACCCAATATatcctcccctcctccactgtgTCGCTGCCCACCAAGCACCAGCTGAGATTTATACCCGATGTGACTGATCGAGATCACTGCATCCTGCATCTTCTGAGATTGACTTAACTGATAATgagctttacatttaatttagatcTCAGACATGAGACTCAAAATGCcccaagtaataataataaaaacatcttggCTGTACCAAAATCAGCAAAAAACAAGCCGTTCAAGTGGACATTCCTGGATATTAAGGAGAATAGTTCGAGCAGTGCCCTGGGCATCTGCGAAACCTGCTGACGATCAGAGCTCGTGTAAAGTGTGATGTGTTGCATTACAGTCCGGAGATGTGGGtgatgcttttttcccctctgtctctGCTTCCCCGATCGTTCTCCAGTCTGGGTAGTCTGACTGTAGTGACCTTATGAACAGAAGAGGCCAGACCCCATTTATAATATCCGTGGACTCCAAAATTGGGTTTGGGTGCTGTTAGTTCACAGGAACgcttttattatcattatgattgtttttattttgttattggtgttctgtgtgtgttgtgtacagaAAATTGGTCATtgggcaataaaataaaataaaatctgaattgtGTTCCACCGCTATTTTATGATCATCTGTGGGAGTGGGAGCAACTTATGGTGGTGCAAGTTGAAAAGATTGTAGCTGTTTTAGGATTTACTGTCTTGCCCCCACCCCCATGCTGGAAATATCATGTCTAAGCAGATGTGCTGCTGTGGCTTTTTCAATATGTAGGACAGAAACCTGGCATCTggcttttttcctttcattattgCTGCCACTATACCTTCACTCTTGGCTCCATTGTATCATAAATGTGGTTTGatattacagtaattaaatagaaaaaaggtCTGGGTGTTTCCAGCTCATTCTGCAGatctgttagtgtgtgtgtgtgtgtgtgtgtctgtacaccTGCAAAAAACACCACTTGTTCAGTCTGTACCTTTTGTTTGCACTAACTTCTGCTTCCGCCAAAGTGAAGATGTTTCAGAGTATTTTATCTTGGCACTGAAGAGTTGGGTGGACTGCTGTTGCAGTACACTATTATAGAAACATTGATGGAAAGTTGGTggaatgtttattaaaaaataaaaataaa

Function

GO:

id name namespace
GO:0006597 spermine biosynthetic process biological_process
GO:0016768 spermine synthase activity molecular_function

KEGG:

id description
K00802 SMS; spermine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 162370 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 206150 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 206150 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 206946 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 243129 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 485926 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 524236 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 546735 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 671991 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 760040 25357887 ~ 25359035 (+) True G14444
AMCG00016536 mRNA upstream 1793 24569128 ~ 24580184 (+) True AMCG00016536
AMCG00016537 mRNA upstream 39178 24479706 ~ 24542799 (+) True AMCG00016537
AMCG00016529 mRNA upstream 245150 24324950 ~ 24336827 (+) True AMCG00016529
AMCG00016519 mRNA upstream 463604 24104905 ~ 24118373 (+) True AMCG00016519
AMCG00016520 mRNA upstream 480412 24089830 ~ 24101565 (+) True AMCG00016520
AMCG00016542 mRNA downstream 3853 24601700 ~ 24617531 (+) True AMCG00016542
AMCG00016540 mRNA downstream 71365 24669212 ~ 24683200 (+) True AMCG00016540
AMCG00016547 mRNA downstream 102898 24700745 ~ 24712231 (+) True AMCG00016547
AMCG00016543 mRNA downstream 114485 24712332 ~ 24719584 (+) True AMCG00016543
AMCG00016544 mRNA downstream 145499 24743346 ~ 24761109 (+) True AMCG00016544
TU17581 other upstream 20170 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 471795 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7460045 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8095974 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 8096829 16484355 ~ 16485148 (+) False AMCG00016329
TU17758 other downstream 410115 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 535351 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 552636 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 552636 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 552636 25150483 ~ 25157461 (+) True AMCG00016566

Expression Profile