RNA id: AMCG00016543


Basic Information

Item Value
RNA id AMCG00016543
length 1704
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00016543
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24712332 ~ 24719584 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTCCACAACAAGCCACCCCCCCAGCGctaacaccaccaccaccaccaacgcCACCACCACAGCTGTGGACGGTGCACTGAGCGATGTGAACAACCTCCTAAAAAACACCAGCAACGTGTCTTCTCTGAATGCGGCCGAGATTGAGAGCCTGGTGAACAAGCTGGTCGCCCTGGTGAACCATACACCTAACATCAGCCAGGATCTTGGCCACGTGGTGGTGGACGTGGTCAGCAACCTTCTCAACGCCTCGGCAGAAAACCTGGCTTCCTCCTCCTCTAACACTGACTTCACAACCCTGAATTCCACGTCTCTGGCTCTGGCCGTGCAGAGGGTCAACAGCAGCAACTTCAAAGAGATTTCCTTCTCCATCGCAGACCCCACCAACCTGCAGGTCAGCGTGACAGGCCAGGCCACCACCAGAGTGAGGAGAGACGGGGAGGGTGATGTCCGCAGCTCCACGACGGCCGCCTCCATCACCTTGCCTGCCTCCCTGATGAGCAGCCTGTCTAGCGAGGAGCACAAGCTGGCCTCCAGGGTGCAGTTCCAGTTTTTCCAGAAGAGCACTCTCTTTGGGGGAGACTCCAATTCACTGAACAGTTACGTCCTCGGGACGAGCGTAGCCAACCTGTCGCTGAGTGGGCTAAGAGACAACGTCACTTTCACCCTCAGGAATCTCAAGCCCCCAACAGAGAACGACAGTGTCAAGTGCATGTTCTGGGATCTCACAAAGAATGGAGGAAAGGGGGGCTGGAATGAAAAAGGCTGCACTGTGGCCAACTGGACAGCTGAAGAAACCATCTGCAGCTGTAACCATCTCACAAGCTTTGGAGTTCTTTTGAATCTGCAGGAGCAGGTGGAGTCGGACCCCAATAATGTACTCATCCTCACCTTTATCAGTTTCATTGGCTGTGGAATCTCTGCCATCTTCCTCTCCATCACACTGATGACCTACATCATCTTCGAGAAGCTGCGTGCCCCTCTGATTGTggtcattattgttattgctgtCAACAAAAACTTCTATGGGCTCGGACACTATGGAAAATTCCCAAATGGTGCAACGGATGATTTCTGCTGGATCCAGAAAGAAACGGTGTTCTACGGGTCAGTGGTGGTGTACTTCTGCCTGGTGTTCCTGCTCAACCTGTCCATGTTCATCACCGTCATGGTGCAGCTGTGCCGGATCAAGCGGCAGAGTCCCCACAGCTCGCGCCAACACAGCACCACCACGAGCAGCCTGCGCAGTGCAGTCAGCCTCACATTCCTGCTGGGCCTCACCTGGGGCTTTGCCTTCTTCGCCTGGGGCCCCGTCAACCTGCCTTTCATGTACCTGTTCGCCATCTTCAACACCCTGCAAGggtttttcattttcattttccactgcGCCTTGAAAGAAAACGTCCGCAAAGAGTGGAGAGCACACCTGTGCTGTGGGAAACTGCGGACGGCGGAGAATGAAGACTGGAGCCAGACAGCTTTGCAGAAGACGAGGAAGCAGCCCGTGACGGGGGGTGCCTCCTTTCACTCCTCCGACTCCACCAACTCCACCTCCTTCCTCGTGAGCGACAGCAGCGGCCCGAGCAATGAGTTTGGTAACCCCTATGAAAACATTGCCATCGCACCACTGACTGACCCCAACTTTGACGTTCTGCTGAATGAGGTTTTCAACAACAGAGCGATGCAGAAAAAAGAACATTGA

Function

GO: NA

KEGG:

id description
K08451 ADGRG2, GPR64; adhesion G-protein coupled receptor G2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 292725 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 336505 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 336505 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 337301 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 373484 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 364189 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 402499 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 424998 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 550254 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 638303 25357887 ~ 25359035 (+) True G14444
AMCG00016547 mRNA upstream 101 24700745 ~ 24712231 (+) True AMCG00016547
AMCG00016540 mRNA upstream 29132 24669212 ~ 24683200 (+) True AMCG00016540
AMCG00016542 mRNA upstream 94801 24601700 ~ 24617531 (+) True AMCG00016542
AMCG00016541 mRNA upstream 114485 24581977 ~ 24597847 (+) True AMCG00016541
AMCG00016536 mRNA upstream 132148 24569128 ~ 24580184 (+) True AMCG00016536
AMCG00016544 mRNA downstream 23762 24743346 ~ 24761109 (+) True AMCG00016544
AMCG00016548 mRNA downstream 92266 24811850 ~ 24823512 (+) True AMCG00016548
AMCG00016549 mRNA downstream 106025 24825609 ~ 24866424 (+) True AMCG00016549
AMCG00016554 mRNA downstream 175518 24895102 ~ 24910014 (+) True AMCG00016554
AMCG00016553 mRNA downstream 192427 24912011 ~ 24920036 (+) True AMCG00016553
TU17581 other upstream 150525 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 602150 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7590400 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8226329 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 8227184 16484355 ~ 16485148 (+) False AMCG00016329
TU17758 other downstream 288378 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 413614 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 430899 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 430899 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 430899 25150483 ~ 25157461 (+) True AMCG00016566

Expression Profile