RNA id: AMCG00016544


Basic Information

Item Value
RNA id AMCG00016544
length 2007
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00016544
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24743346 ~ 24761109 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAAGAAGCTGTCAGAGATGGCACGGTGGGACAGAAGAACAGCATTGGGCAGTGAATGGGTCATCCTCGGGGTCTTCTTCTGGACTGTTGCATATCTAGAATGCATGGAGCAAGAGGTGATGGTGACATGTTTCTACTCGAGGGACTGCCTCCTGCCCTGCGAATTCCCCAGTGGCAATGCAACAGTCATCCACTGGCTGAAGAGAAGCATTGGCGCCGACATCAGGGTGCACAGCTACTACAACAACCAGAACCAGCTGAAGATGCAGGACCCACAGTACAGCGGCAGGACCCAGCTGTTCAGTGACCAGCTGGCAAAGGGCAACGCCTCGCTGCTGCTCAAGAGAGTGCACATCCTGGACAGAGGCCAGTACCAGTGCTACACCACCACAGATCTGGTGAAGCAGGAGGCCTTAGTTGTCATGAAGGTGGAAGCACCCATTAAGTCCCCGACCATAGAGTTCAGGAAGCAGAGCGGCTATAATGAGGTTGTGTGTAAATCCACGGAGGTATTCCCTGCACCTCATGTTGGGTGGTCGGTTGTGCCTGAAGTGAAGGGCAATTTGAAATACTCCACAACCAAAAAACCAAACAAGGAAGGGCTGTATAATGTGGAGAGCAAGCTGAAGATACCAGACAGGCCTTCAAACCATACCTACATCTGCGCCATCAACTCTACATCCAGGCAGCATAAATGGAAGATCTCATTGACAGAACAAGtaaTTGAGGGTTTTGAGGGCAGGAATCTCACCATCCCATGCAGCTCTCCTGGGGACAATCTGGAGAACGTCACTCTGACATGGAGCTTCAGAAACAGCAGCACCTTCCTGAAGTTCAACAGCCGGACAAAGAAGCTGGTGAATGACTGGAAAGAGGACACCCAACTGGACATGCAGAGTCTCTACCATGGCAATGGCTCGTTGGTCCTTGTAAACCCCAAGATCTCAAAACACACAGGGAGATATGCCTGTCGCATCGATGCCACTGAGAGGCTGCACTTGATACAGACAGATGTAGTCATAGAGGTGACAGTGACGTGTCTCTACTCTGGGAACTGCCTCCTGCCCTGTGAATTCCCCAGTGCCACTGCGGCAGTCATCCACTGGCAGAAGAAAAGCACTGACTCAGACATCATAGCTCACAGCTACTACCACAACAATGACCAATTGAATAGCCAGGACCCACAGTACTGGGGCAGGACTGAGCTGAACTCTGTCCAGGTGCAAAGGGGCAACGCCTCACTGGTGCTCAAGAATGTGACCATCTCAGACACAGGACGGTACCAGTGCTACACCAGCACGGATCTGGGGAACCAGGAATCCTTCGTTAATCTAAAGGTGGAAGCTCCCATTAAGTCTCCGACCATAGAGTTCAGGAAGGAGAAAGGCGATAATGAGGTCGTGTGTAAGTCCTCAGAGGTCTACCCAGAGCCCCATGTTGAGTGGTTGGTTATACCTGAAGTGGTTGTCGAATTGAAAAACTCCACAAACAAAGTCAACATGGAAGGGCTGTACAATGTGGAGAGGAGGCTGAAGATACCAGATGGCCCTTCAAACTACACCTACATCTGCGCCATCAACTCCGAGCAGCAGAAATGGAGGCTCTCATTGAGAAAACAAGTAATTGAGGGTTTTGAGGACAGGAATCTCAAAATTCCATGCACCTCTCCTGGGGACAATCTGGAGAACTTCACTCTGACATGGAGCTTCAGAAACGGCAGCACCTTCCTGAGGTTCAACAACCGGACAAAGATGCTGGAGAATGACTGGCATAAGGACACCCAACTGGACATGCAGAGTCTCTACAATGGTGATGGCTCGTTGGTCCTTGTAAACCCCAAGAGCTCAAAACATGCCGGGAGTTACACCTGTCGCATTGAAGCCACTGAGAGGCTGCACTTGATACAGACAGATGTAGTCATAGCGATAACCAACAAAGTGAAATGTGACAACGATGAGGAGCAAATGCTCAGTCTGCCCTGCTCCAGTGTGCCCTCAGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 323739 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 367519 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 367519 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 368315 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 404498 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 322664 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 360974 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 383473 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 508729 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 596778 25357887 ~ 25359035 (+) True G14444
AMCG00016543 mRNA upstream 23762 24712332 ~ 24719584 (+) True AMCG00016543
AMCG00016547 mRNA upstream 31115 24700745 ~ 24712231 (+) True AMCG00016547
AMCG00016540 mRNA upstream 60146 24669212 ~ 24683200 (+) True AMCG00016540
AMCG00016542 mRNA upstream 125815 24601700 ~ 24617531 (+) True AMCG00016542
AMCG00016541 mRNA upstream 145499 24581977 ~ 24597847 (+) True AMCG00016541
AMCG00016548 mRNA downstream 50741 24811850 ~ 24823512 (+) True AMCG00016548
AMCG00016549 mRNA downstream 64500 24825609 ~ 24866424 (+) True AMCG00016549
AMCG00016554 mRNA downstream 133993 24895102 ~ 24910014 (+) True AMCG00016554
AMCG00016553 mRNA downstream 150902 24912011 ~ 24920036 (+) True AMCG00016553
AMCG00016561 mRNA downstream 254931 25016040 ~ 25020221 (+) True AMCG00016561
TU17581 other upstream 181539 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 633164 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7621414 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8257343 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 8258198 16484355 ~ 16485148 (+) False AMCG00016329
TU17758 other downstream 246853 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 372089 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 389374 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 389374 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 389374 25150483 ~ 25157461 (+) True AMCG00016566

Expression Profile