RNA id: AMCG00016545


Basic Information

Item Value
RNA id AMCG00016545
length 5379
RNA type mRNA
GC content 0.59
exon number 38
gene id AMCG00016545
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24762569 ~ 24786410 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGAAGGCCAGGACcccggctcggctcggctctgCTGCTGTCGTCAAAATGAACGTGGACGTGCCAGATTTCGGGGAGGCCGCTCCCTTCCTGCGCAAGAACGAGAAGGAGATAATGGTGCTGCAGACGGTGCCCTTCGAGGGCAAGAAGAAGTGCTGGATCCCCGACGACAGGGAGGCTTACGCAGAGGTCGAGATCATGGAGACTCTTGGGGACAAAGTGACCGTGATGACGGCTGATGGCCGGACGCTGCTGGTGAAGGAGGGGGACGTGCAGCAGATCAACCCACCCAAGTTCGATATGATGGAGGACATGGCCATGCTGACGCACCTGAACGAGGCGTCCGTGCTGCACAACCTGCGCCGCCGCTACGCCAATTGGATGATCTACACATACTCTGGGCTGTTCTGTGTCACGGTCAACCCGTACAAGTGGCTGCCGGTGTACAAGGCCGAGGTGATTTCGGGCTACAAGGGGAAGCGGCGCACGGAGATCCCTCCGCACATCTACGCCATCGCGGACAACGCCTACCACGACATGCTGCGCAATCGGGAGAATCAGTCCATGCTAATCACAGGGGAGTCCGGTGCTGGGAAGACGGTGAACACAAAGCGTGTCATCCAGTACTTCGCCACGGTGGCGGCCATCGGAGACGCGGCCGGCAAGAAGAACGGTAACCTGGAGGACCAGATCATTCAGGCCAACCCGGCACTGGAAGCTTTTGGCAACGCAAAGACCCTCCGAAACGACAACTCCTCCCGATTCgGTAAATTTATACGTATACATTTCGGACCGTCGGGGAAACTCTCCTCTGCAGACATTGAGATCTATTTGCTGGAGAAGTCGCGGGTGATCTTCCAGCAGCCAGGGGAGCGGGACTACCACATGTTCTACCAGATCCTGTCTGGGAGGAAGCCGGAGCTGCAGGAGATGCTACTGGTGTCCAACAATCCATACGACTTCCAGTTTTGCTCTCAGGGCGTGGTGACAGTGGACAACCTGGACGACGGAGAGGAGCTTCTGGCGACTGACGAGGCCATGGACATTCTGGGCTTCACCTCCGATGAGAAGTACAGCGCCTACAAGCTGACCGGAGCCATCATGCACTTTGGCAACATGAAGTTCAAGCAGAAGCCGAGGGAGGAGCAGGCGGAGGCGGACGGGACGGAAACTGTGTATGACCGCATGTTCAAATGGCTGGTGACGCGGATCAACCGGACCCTGGACACCAAGCTGCCCAGGCAGTTCTTCATCGGGGTGCTGGACATTGCCGGGTTTGAGATATTCGACGTCCCCTACAATATCAGCGGCTGgctggagaaaaacaaggacCCCCTGAACGAGACCGTGGTGGGGCTGTTTCAGAAGTCCGCGAGCAAACTGCTGGCGAGCCTCTTTGAGAACTACATCAGCGCTGACAGTGATCAGTCCAGCGAGAAAAAGCGCAAGAAAGGAGCTTCTTTCCAGACGGTGTCCTCCTTGCACAAGGAGAACCTCAACAAGCTGATGACGAACCTGAAGTCCACGGCCCCTCACTTTGTGCGCTGCATCATCCCTAATGAAACCAAGACTCCAGCCACGGGGGCAATGCCAGCACCTGAGAAACTTCACTCTGCCTCCTGCAGGTATCGGATCCTGAATGCCTATGCCATCCCGGAGGACAAATATGTGGACAGCAGGAAGGCAGTGGAGAAGCTCCTGGGCTCTCTGGACATCGACCACACCCAGTATCGCTTCGGCAACACCAAGGTGTTCTTTAAGGCGGGGCTCCTGGGGCTGCTGGAGGACATGAGGGACGAGAGGCTGGCCAAGGTCCTGACCATGATTCAGTCCAGAGCCAGGGGCAGGCTGATGCGCATGGAGTACCAAAAGATGCTTGATAGAAGGGAGGCTGTGCTGGTGATACAGTGGAACTTGCGCACCTTCATGGCGGTGAAGAACTGGTCCTGGCTGCGGCTCTTCTTCAAGATCAAGCCCCTGCTGAAGTcagcagagacagagaaggagatGGCCACGCTGAAGGAGGAGCACCAGCGACTACAGGAGACGCTGGAGAAGTGCGAGGGCCGCAGGCGGGAGCTGGAGGAGCGGCAGGTCTCTCTAATCCAGGAGAAGAATGACCTTTTGCTGCAGCTGCAGGCTGAGCAGGACACGCTGTCGGACGCGGAGGAACGCTCCGACCTGCTGATCAAGGCTAAGATCCAGATGGAGGCGCGGATGAAGGAGCTGGTGGAGCGcctggaagaggaggaagagaGCCTTGCTCCTCTTGACTCCCCCTTGTTCAGCATGTTCTCTCTTGTTTTCAAAGTCCTCCACTTCAGCAAGCTAGCAGAGCCACGTACTCGATGCTCATGCTCGGTCTGGCTCTTCCCCTTcttcagcctctctctctctgccctgcaGGTGAAGAACCTGGTGGAGGAGCTTTCAGGGCTGGAGGACACGGTGCTGCGACTGAGCCGGGAGAAGAAGGCCGTGCAGGACAGCCAGCAGCAGACCCTGGACGACCTGCAGGCTGAAGAGGAGAAggtcctctccctctccaagGCAAAGACCAAGCTGGAGCAGCAGCTGGATGACATGGAGGGCACACTGGACCAGGAGAAGAAGACACGAGTCGACCTGGAGAGAGTGAAGCGGCGGCTGGAGGGGGACCTAAAGCTGATGCACGAGAGCATCATGGACCTGGAGAACAACAAGCTACACCTGGAGGAGAAGCTGAAGAAGAATGAGTTTGAGATCAACCACCTGAACTCCAAGATTGATGAAGAGCAGGCGGTGGCCAGCCAGCTGCAGAAGACCATTAAAGAACTCCAGGCGCGCAtcgaggagctggaggaggaacTGGAGGCGGAACGGGCGTCCAGGGCGCAGGCGGAGAGGCAGCGAGGAGAGCTGGGCCGCGAGCTGGAGGAGCTGGCTGAGCGGCTGGAGGAGGCCGGGGGGGCCAGCTCCGCCCAGGCCGAGCTGAGCAAGAAGCGCGAGGCGGAGCTGCTGCGTCTGCGCCGGGACCTGGAGGAGGCCACGCTGCGGCACGAGTCCACGGCCGCGGCTCTCAGGAAGAAGCACGCCGACGCGGTGGCCGAGCTGGGGGAGCAGCTGGATGGCCTGCAGAGGGTGAAGCAGAAGCTCGAGAAGGAGAAGAGCGAGCTCAGGCTGGAGCTGGACGATGTGGTCTCCAACACGGCACAAGTCTCCAAGGCCAAGGCGCTCTCGGACAAGCTGTGCCGAACCTATGAAGACCAGCTGAGCGAGGCCAAGAGCCGCATCGAGGAGCTGACTCGCCAGGTGTCTGACCTCGGCACCCAGAGGAGCCGCTTGCTGACTGAGAACGGTGAAATGAGCCGACAGCTAGAAGACAAGGACGTCCTGATCAGCCAGCTGTCCAAGGGCAAGAACATCTTCACTCAACAGCTTGAGGACCTAAGGaggcagctggaggaggagaccaAGGCGAGGAGTGCTCTGGCCCACGGGCTACAGGCGGCGCGCCACGACGGGGATCTGCTGAGGGAGCAGTacgaggaggagctggaggcgCGGGCCGAGCTGCAGAGGCTGCTGTCCAAGGGCAACACGGAGGTGGCACAGTGGAGGAACAAATACGAGAGCGACGCCATCCAGAGGacagaggagctggaggaggccaagaagaAGCTGGCTGCTCGGCTGCAGGAGGCGGAGGAGAGTGTGGAGGCGGCGAACGCCAAGTGCTCGTCGCTGGAGAAGACACGCGGCCGCCTGCAGGGAGAGCTGGAGgacctgctgctgcagctggagCGGGCCAGCGCTGCGGCCGCCACCCTGGACAAGAGGCAGAGGAACTTTGACAAGGTGTTGGCCGAGTGGAAGATGAAGCATGAGGAGAGCCAGGCCGAGCTGGACGGGGCGCAGAGGGAGGCGCGCAGCTTGAGCACTGAGCTCTTCAAGCTCAGACACTCGTACGAGGAAGCCCTGGACGGCCTGGAGACCAcgaagagagagaacaagaacCTTCAAGAGGAGATTGCAGATCTGACCTACCAGATCAGTGACAAGATCAAAGCCCTGCATGAGATCGAGAAGATGAAGAAGCAGCTGGAGCAGGAGAAGATAGAAATCCACACTGCTTTGGAGGAAGCCGAGGCGGCTTTGGAACATGAGGAGAGCAAGACCCTGAGAGTGCAGCTGGAACTGTCCCAGATGAAGGCGGACTTTGAGAGGAAAGTTGCTGAAAAAGAGGAGGAAATTGAAAACTACAGGGGTAATTACCAGCGCTCCATAGAGGCCCTGCAGTCCGCCCTGGACGCCGAGACCAAGAGCAAGATGGAAGCGATGCGTCTGAAGAAGAAGATGGAGGGAGACCTGAATGAGATGGAGATCCAGCTGGGCCATGCCAGCCGCCAGGCCATTGAGGCGCAGAAGAACATGCGTGTGCAGCAGGCCCAGGTCAAGGAGCTGCAGGTGCAGGTGGACGAGCTGACCCAGGAGCGTGGTGACCTGAAGGAGCAGGGCTGTCTGGCAGAGCGGAGGTCAGTGCTGCTGCAGgcggagctggaggagctgagGGCCGCCCTGGAGCAGACGGAGCGCAGCCGCAAACTGGCTGAGCAGGAGCTGCTGGATCTCAGTGAGAGGAACACCAGCCTGATGAATCAGAAGAAGAAGCTGGACAGCGACATCACTCAGATGCAGCAGGAAGTGGACGAGGCCGTGGAGGAGAGGAAGAACGCGGAGGAGAAGGCCAAGAAAGCCATCAACGATGCTGCGGTGATATCGGAGGAGCTGAAGAAGGAGCAGCACACCTCCACCCACCTGGAGAGGATGAAGAAGAACATGGAGCAGACCATCAAGGACCTTCAGCACCGCCTGGACGAGGCTGAGCAGGTGGCCCTGAAGGGAGGCAAGAAGCAGATCCACAAGCTGGAGACTCGGGTTCGAGAGCTGGAGAGTGAGCTGGAGGCAGAGCAGCGGAGGCACGGCGAGGCGCTGAAAGGCCTCCGCAAACATGAGCGCCGCGTCAAGGAGCTCACCTTCCAGACTGAGGAGGACAAGAAGAACTTGGCcagggtgcaggagctggtGGACAAGCTGCAGCTGAAGGTGAAGAGCTATAAGAGGCAGGCCGAGCAGTCGGAGGAGCAGGCCACAGTGAACCTGGCCAAGTACAGGAAGGTGCAGCATGAGCTGGACGATGCCGAGGAGAGGGCAGAGGTCGCGGAGTCGCAGGTCAACAAGTTGAGGAGCAAGAGCAAGGACCTCGGGCCCAAGCTCCCTCCGCTGAGTGAATATACCAGCAGCCTCAACATTTGTCCCCCGTGCAGCAATCCTGGCTGCCCTTCTGAGTCCCGAGGCCAGCCCTGCTCTGCCCAGAGGGAGTGGGTGCTGCCTTGA

Function

GO: NA

KEGG:

id description
K17751 MYH6_7; myosin heavy chain 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17623 lncRNA downstream 78034 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 144224 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 156248 24606108 ~ 24606321 (-) True G14214
TU17614 lncRNA downstream 160562 24601698 ~ 24602007 (-) True G14213
TU17594 lncRNA downstream 195891 24553692 ~ 24566678 (-) False AMCG00016538
TU17733 lncRNA upstream 118711 24905121 ~ 24906546 (-) True G14311
TU17761 lncRNA upstream 221564 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 221746 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA upstream 221746 25008156 ~ 25010763 (-) False AMCG00016562
TU17860 lncRNA upstream 335680 25122090 ~ 25122375 (-) True G14400
AMCG00016546 mRNA downstream 23447 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016538 mRNA downstream 195613 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016539 mRNA downstream 212444 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016534 mRNA downstream 369714 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016535 mRNA downstream 386762 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016550 mRNA upstream 3738 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016551 mRNA upstream 16326 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016552 mRNA upstream 89454 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016555 mRNA upstream 97493 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016556 mRNA upstream 144407 24930817 ~ 24953633 (-) True AMCG00016556
TU17551 other downstream 445767 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 445767 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1062314 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1306758 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4627022 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 94738 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 224931 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 225954 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 294158 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 487254 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05365373_05384192.mRNA True 6314 mRNA 0.47 44 CI01000001 5365162 ~ 5384238 (+)