RNA id: AMCG00016549


Basic Information

Item Value
RNA id AMCG00016549
length 6574
RNA type mRNA
GC content 0.58
exon number 22
gene id AMCG00016549
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24825609 ~ 24866424 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCCCGCTGTTGGTACGGTGCAGAAATGTGACTGTGCCTGGGCACTGCACAAGCCCCATCCCTACACCCTGTACTCTGCCCACATTCTTCAACAATGTGAGTCTGATTGGCCAACCGACCTCTATAAAAAGCAGCAGCGCAAGAACTGCAGCTTCCCGAGAGAGATCAGCCCCCATCAGCCTGCCTTCGCCTCCAAAGCCACGGCTTCCTGTTTACGCAGGAGATCCTTCCCTGCGAGAAACCCGAAGCCGACTCCATCTCCTCTGcctcccccttccctctctgtccgtctctggGAGCTTGCATTCCCGCTGCGGCGCCAGATGTTTGCGGCGCTAAGGGCGTTTGATCTCGACCGAGGCGCACAGACACTGCAGGACGCAGCTGAACACAATGAGGAGAGTCCGGGTCAGCAGAAAGAGGCATCACCCCAAATCAGCCCTCCCTCCACTCCCAAGAGTGCAGCCCTGGACCTGATTGACACAGGGAAGGGGCTGAAGGTGCAGACAGGGCAGCCCCACCTGGTGAGCCTGGGGAGCGGCCGACTCAGTGTGGCCATCACCCTGCTGCCCCTGGAGGAAGGTGTGACTCGAATCGGACGGGAGGATGCACCCACTCCCCAGGACATCACCATCGAGGGCCCAGGCATCGCAGCCGAGCACTGCCGCATCCTGCGCCGGGGGGTCCAGGTCATGCTTGACCCCTGCGGCAACCTCTGCACCCTGGACGGCATGCCTGTGACACAGCCCACCCCGCTCACACAAGggtACACGCTCTGCCTGGGTAAATCCTACTACTTCCGCTTCAACCACCCCGAGGAGGCCAGCCGCATGAAGAGCATGCTGCCCCAGCGGAGCCCCGTGTCCTATGGGTTCAGTCCAGacTATTTGAAACACGGCTCCGAGTTCGGCCAGGGAGGCTCGAGGGCGCGGGGGGTGCGTGGGGGGGCGGAGCTGCAGGACATCGTGGACTCACTGCAGAGGAGGAAGGTGGCTGCCGACCCCAGCCTGCGCTCCAACGGGGAGTACAGCCCCTCCTACTTCACTCTGGCCCAGACGCCCCCTGTCAGCCCCGGCCTGCTGTCCCCCCCGGGCTCACATGGCCAGGACTCTGGCTGGGCGGGGGGGCTGAGGCATTACAGCGCAGACCGCCCCCCACTGTCCATCAAGCTCTCCTCACACCTGTCCTACGGCATGCCCCCCTCGCCACGCCAGCGCTCCCTGCAGGCAGCGGACGCTGCGGACCTGCACTCCagagagcgggagagggagCGGTCCCTCAGCCCGGCAGACCTGCTGTCCTACTCCAGGTCCAGCCCCCGGAACAAGTCCCAGGACAACGTCTTCTTCTCCAGCCCCCTGGATGGCCGCCGCGTGGCCGGGGGTTCGCTGCTGTCCATGTGGAACAGCGCTGCGCTCGGAGACAGCCTGCCTTCCGGGGGCGGAACCGGGCCGGCCAGCATGCCCTCCAGCCCGCGCCTGGCCCGCAGACTCAACCTGCAGGACAGCCAGGCGTTGCAGGCCAGACCAGGCCTCGACTGCGCGCCCAGGCAGAGGAAGTACTCCGCTGGCTCCCTCTCCAGCATGGGGGCGTACAGCCGCTCACTGCCCAGGCTCTATAAGGCGGCTGACAGCCAGATGGCCCCGCTCACCCTGCCCCCCCGCCGCTCCCTGGACAACCGCAGCCGCTCGCCCGCCCCCGAGTCCGCGCACAATGGGGTGGATCTGGATCAGTTCTCCGTGGCCCTGGCCTCCAAGACCTCGCGTGGCCTGGCCTCTGTGGACAGGGACTGCGACGGCTCCGTGACCTCCAGCGTCCCCGTCAGCCCCAGGGTGGCCAAGAAGATGAGCCTGACCTCCCCGGGCTCCCCCTGCGACCTCGAGAGGAACGGCCTGCCTGGCTCATCCCCCGGCCTGGGCGAGAGGAAGTTCTCCTTCGGCAGGAGCGCGGGCCTCAGCCCCGAGGTGGCCGGGGGGGACGCAGCGAAGCCCCCGCCCTTCCGAGAGAGGAGGGGCAGCATCAGCTCGCTCAGTGGCAAGGAGGAGCTGCGGGACTACCACCAGAGGCAGCGGGACGAGCGGCTGCGTGAGCAGGAGGTGGAGAGGCTGGAGCGGCAGCGTCTCGAGACCATCCTCAGTCTGTGCTCAGAGCTGGGCCGGGCGGACCGGGAGCCGGCGGGCAGCGCTGTGGCCGACCTGCAGAAGATCAACAAGGAGCTGGAGAAGCTGCAGCTCTCCGACGAGGAGTCCGCGTCCTCGGACTCCGTCGCCGCCACCGCCTCCCTCGAGAACGGCTACCAGACCCGGCATCCGGCCCCCTACCAGGCCGGCCCTGGGGACGACCgcctgccccccacccctccctccaAACACCACGGGCAGCCGGGACTAGGGTCGCAGTCCCCCTCTGTATCGCTGAGGGGCACCGGGTCCTCCCTGCACCTGCTCAGGAGTAACAAGGGCTCGGAGTCGGCCGGGGACGAGCGGCGGAGGCAGGAGGTAACCCGTGTGGAGGAGGAGAGGTTCCAGGCGGTCCAcaacctggaggagctggagcagaaGATCAAGGACCTGGACAACCAGATGGATGAATCCGTCAGAGAGATGGACATGGAGCGTGCGCTGCTGGAGGGCGAGCAGGATGCTGAGAGCACGCAGCTGCAGCACGAGAAGGAGGTGCTGGAGCAGCTCAACGAGAAGATCGCCGACCTCGAGAGGGACGTGGTGTCAGAGAAGTCCAAGGAGAAAGCAAAGCTTGATgctgaaagggaaaaaatagaGAAGCTGCAGGAGCTTTATACTGAGCAGAAGACCCAGCTTGATAACTGTCCTGAGTCCATGAGGGAGCAATTGCAGCAGCAGCTGAGCAGGGACGCCGACCTGCTGGAGGGGGAGACCAAGCGCTTTGAGGACCTGGAGTTTCAGCAGCTGGAGCGCGAGAGCCGGCAGGACGAGGAGaaggagacacagacacagcagctGCTGCGCGAGATGGCCGAGTACCAGCGCAGCACCGTCTCCAGGAAGGAAAGGCTGTTGACACTGAAGAAGCAGGCCAACCAGATCAGCCAGCAGGCCCAGCGAGACAAGGAGAACTTCCTGAAGGAGAAGAACAACCTGCTGCTGATGCTGCAGAGGgaaaaagaaaatcttgaaCATCTGGAGAAGAGATACACGGAACTGACAGGGGGGCGGGGCTTCCCAGTGAGCCCTGTCAGTATGAAGGAGcatttCCGAAACctggaggagaggaagaagtccgGCAAGGAGGGGACGCACCTGAGCGACACCCTGCCCAGGAAGAAGAGCTCCCCTGCAGTGTCTGCCCACTTCAGCAGCTCCACGCTGGGCCGCAGCATCACGCCCAAGTCTCACCTGCCGCTGGCACAGAGCTCCAGCTGTGGCAGTGTCCTTCCGCGGAGCCTCGCCGTGTCACCCAAGGACTCCCTGGACTCTCGCCGGCTGCACAAAGGGCATAATCACGACCATATGAGCGAGGAGCAGCGGCAGAGACTGACTGAGCTGTGCAGCAGAACGGCATCCGAGTCGAATGTGTATCTGGATTCTTTCCACTATGCTGACAATGGATATAAGGAGCACGCCTACGACACGCTGAGCATCGACAGCTCGGACAGCATGGAGACCAGCATCTCGGCCTGCTCCCCGGACAACATCTCCAGACAGGCTCTGGAGGAGGAGCGGAGGCGGCGGGAGGACCTGGAGAAGAGGCTGCAGGAGGAGACCAGTCGGCGGCAGAAGCTGATCGAGAGGGAGGTCAAACTGCGAGAGAAACAGAGGGCACAGTCTCGACCCCTGACGCGCTACCTCCCAGTGAGGAAGGACGACTTCGACCTGCGCAGCCACATCGAGTCGGCCGGTCACAACACCGAGACCTGCTGCCACGTGTGCCTCACCGAGAAGACCTGCCGCGGCTTCCTGGTCAAGATGGGCGGCAAGATCAAGACGTGGAAGAAGCGCTGGTTCGTCTTCGACAGGAGCCGGAGGACGCTGTCGTACTTCGCAGATAAGCATGAGGCGAAGCTGAAAGGGGTGATATATTTCCAGGCCATTGAGGAAGTGTACTACGATCATTTAAAGAACGCGCACAAGAGCCCGAACCCCTCGCTGACGTTCAGCGTGAAGACCCACGACCGCGTGTACTACATGGTGGCCCCCTCGCCCGAGGCCATGAGGATCTGGATGGACGTCATCGTGACCGGCGCCGAGGGGTACACCCAGTTCATGGTGTAGCCAAGGGGCGAGCAGGGCAGCCGACAACAATGACGACAACGACAACCTTTCGGCAAGAACTGCGCCAGCCAGGGCTCCCACCAGGCCCAGACAGACTCGGACCCGGGCCCTGTGCACCGGTGTCCTTCCATAAGAGATAACGGGTACACTCAGCCAGTCAGCCTGTcctctgtttttactttttatattatcttatttgtatttttgtattattatttccatgCATTTATAAAAGCAGCAGgggaaaaacaaccaaaaaacaagacaaatccCACCCACTTTTCCGTCAGGGGGGAGTCTAAGTCATATGCAATAGAAAACACCTAGAGCTCCTCCCACCCTCGCACCCCGGCTCGCCGGGTGGGGTCTCTGGAAGCCCGTAGCCCTGGGGAGAGTGAGGACAGCAGCCAGAATGGACGGCCCTCGAGGTTTGCCACCCAGGAGCTAGTGCCACCGTCGGAGCCTCTGCCTTTGCTGCAGGAGTTGCTCTGCCTGGACCAGCTGAGCAGTGCGACCAAGcaaccatcatcatcatcttcatagTCATCTTCACCTTTACTGTGCCTTATCGCTACCTGCCAGGCCGATTCAATCCGGCATGTCAGTGACTTCCCATGGCCGGGGTTTTGAGCTGATCAATCCGAGGAATAATCCGGACCTGAGAGGAAATGTCATTGACGTTTCATCCGAGAAGTGTCACTGAGTCcccagccctgtgtgtgttCACTTCCTGTGTCACCATGTGCTTGcgtttcagaaaacattttgacagATGTTGCTCAGGAACAATTGAGAAAAAAGGAGAGGCAGCCAATAATCACACCTGAACCCGCAAAGCATCCTTTAACACGAACTTCAAAAACTGAAcgtccagagagagagagagattcaggATCATGCCACAGCTGCGCATTTTAACCAAAGATATGTCGTATGTGTCGTAACGCAGAGTGCTCAGTCAGGTGACTCCGCCCCTCTGAGGACACAGTTTttggggggggtgtgtgtgtgtgagctgggTGCGGTGGGGTGGGGTGCTAACTAACAAGATACTGATACGGTACTTCGAAGCCTTCCCTGCCCAGTGTCGGAGGTGTTCAGTGCTTAGAGGTATTGGGCCTGGCGCAGGAATGCCGTAATGGCACCGGTGATCAGAGCAGGTGTCCCACCGTGACCTCGGGCAGGTCCAGACCCGAACCCCGGCTCTGTGCCGTTCCATAGGGCTCGCACTATATTTTTATACGTCAAGCATATCATTCGTTAAACCATTATTAACCAGATTGTATCTAAAGTGCTAgctgaatgtttttaaatcctttttttgtatgtattttaagaaaaaagtatatatattttattaatcgcATTCATTCTTGCTTGCATTTATCTATATAAAGCTTTAAACCCTTGTGAATGGCATTACTCACAGGAAGTGCCTTCTTCTGTTAAACATGGGGTGTCAAGCTCCCATCTAGGGGCTTGTGGTGTCTGAGGTTTGTCCCAGCCCAGCTATCGGCAGCTCCATAGTTAAAGCAGCAACGGGATGGGCTTCCCACTTCTCTCCGGGACTCCACAGTGGTGAGGGGACACTATCTTGTGTAAGTCACCGTATTTGATGTTGATACAATTTAATTGGGGGAAATCTTAAATGAGCCCAGCTGAGAAAATCACAGCATTTACAGAGTGATTGAGAGCTCCTGTGggaacaaacaccagcagaCATTGCggcccccaggactggagtcggCCCCCTGCGTTGGCCCCTGTGCGCGCTGTTTTTGTGGCTGTGGCTACTGTGGCGGTGCGGCGGGAGGGTTGGTAACCTCGGTGGCAATGCTGCCATCACACCAATTTAGCCGACATCCTTCCAGTCACTTTTGTTTGTCGTTCTCCCATGACCTTTTGTCAGCAAGCTTAGAAGgtaggtgtgtgtctgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgttgccagtTTACATCTGGGTAGGTATGTTGTTTGCCCGGTGCTGTGTGTGAGACTGACACAGTTGCAGACCTTACCTCCCTGTCCATTATCAATGGGAACTGACCAGTTAATTTCAGCAATAATGAATAAGAATGATTGATAATTAACGGAATGGTCTGTGAGAAGTGTTGAGCACACTGCAcccaaacattttatttcatgaatttatgaaaaacatgaatctcCTTCCAGttctaaatgaaaacaaatcctcCTTGTGTCtgatgtattgtgttttgttttatttcagtatttatgcTATTGTTTATCTTGCATGCTTCgtttatttttgcatacaaAGAAATAAAGCCGAA

Function

GO: NA

KEGG:

id description
K23794 PHLDB; pleckstrin homology-like domain family B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 406002 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 449782 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 449782 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 450578 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 486761 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 217349 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 255659 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 278158 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 403414 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 491463 25357887 ~ 25359035 (+) True G14444
AMCG00016548 mRNA upstream 2097 24811850 ~ 24823512 (+) True AMCG00016548
AMCG00016544 mRNA upstream 64500 24743346 ~ 24761109 (+) True AMCG00016544
AMCG00016543 mRNA upstream 106025 24712332 ~ 24719584 (+) True AMCG00016543
AMCG00016547 mRNA upstream 113378 24700745 ~ 24712231 (+) True AMCG00016547
AMCG00016540 mRNA upstream 142409 24669212 ~ 24683200 (+) True AMCG00016540
AMCG00016554 mRNA downstream 28678 24895102 ~ 24910014 (+) True AMCG00016554
AMCG00016553 mRNA downstream 45587 24912011 ~ 24920036 (+) True AMCG00016553
AMCG00016561 mRNA downstream 149616 25016040 ~ 25020221 (+) True AMCG00016561
AMCG00016559 mRNA downstream 154421 25020845 ~ 25031053 (+) True AMCG00016559
AMCG00016557 mRNA downstream 168514 25034938 ~ 25049552 (+) True AMCG00016557
TU17581 other upstream 263802 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 715427 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7703677 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8339606 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 8340461 16484355 ~ 16485148 (+) False AMCG00016329
TU17758 other downstream 141538 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 266774 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 284059 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 284059 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 284059 25150483 ~ 25157461 (+) True AMCG00016566

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_06547019_06585316.mRNA False 4914 mRNA 0.51 23 CI01000018 6546386 ~ 6585316 (-)