RNA id: AMCG00016550


Basic Information

Item Value
RNA id AMCG00016550
length 4180
RNA type mRNA
GC content 0.55
exon number 22
gene id AMCG00016550
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24790148 ~ 24800194 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCcgatacagatttaaaaaacacacgTCGCTTGAAATTAATGCAAGTCTAATTAACACTCTAAAAAGTGATTTCGggtgttttaaattgaaaacgAGGATTTTAGCTTAACCTGTGTACAGCGGTTCCCCCCGTTTCGCGGTGGAATTTACTTTCTGTTCAAAGTCAAGGCGGGTTTTGAGGATCGGGAAGTTTAACGGCTGCTTGATGACAATAACAACACCAGGATTGTCAGGGCTGTGCGGTCAGGGTTTCAGGATGGATGCGACGACGTGTTTGAAGTCTTTACTCTTGGGCATCAACCAATACAAGAACAACAACTCCGCCACCAACGCCGCACAGCTGCAGAGACAAATAGATGATGTCTCCGGACTGAAGTGTGCCAGGCTGTTCTGCCCTAATCAAGTGCTGCCCAGCGAGTGTGTGGGGGGTCTGGTGGAGCTGGCAGGGGACCCCAACACCAGCCCTACCCTGAGGGGGAAGATCGTCTCCCTGCTGTCTCAGCTAGCCTCAAATGAAGAGACCAGAGAAGCTCTCCACAGCAGCTATGACCTCACCAGCGCCCTGGCGTCCATCATTCACTGCAACAGCACCACCCCCAGTGAGCCCATCGTACTGCAGTGCATCCAGGTTTTACAAAGGGTCACCTACAACACCAGGATATTCCACTCCACTGCCTACATCGACGAGCTCATAGCCTTCCTCATGCACCATATTCAGTCCCCTAATGATGACCTCACAATGCCCTGTCTGGGTCTCCTGGCCAACCTCTGCCGATACAACCTGGCCATTCAGGCTCACATCAAGTCTACGAGTCAAGTGAAGGCTTTCTATCGCACCCTCATCAGCTACTTGGCGCACAACAGCCTGACCGTGGTTGTGTTTGCATTGTCGCTGCTGACCAGTCTGACCCTGAATGAAGAGGTTGGGGAAAAGCTCTTCCATGCAAAGAACATTCACCAGACCTTCCAGCTAATATTCAACATCATTGTCAATGGAGACGGGACTCTGACCAGGAAGTACGCAGTGGACCTGCTGGTGGATCTGCTGAAGAACCCCAAGATTGCGGATTACCTGAGCAGaTATGAACACTTCTCGCTGTGTCTGACCCAGGTGCTGGGCTTGCTGCAGGGGAAGGATCCTGACTCCGCAGCCAAGGTTCTGGAGCTGCTGGTCTCTCTGTGCTCTGTCTCCAGTCTGCGCCGCATCCTCTGTCAGGCCGTGTTCCGGTCCAGCGTGGCCCAGCCCAGGAGCTGCGTGAAGAAGGACAGCCGGGGCCGCACCCCCGAGCCGGGCCTGGCTCTGATCCACTGGGCCAGCCTGCCGCTGCAGGGACCTGACAGTTGCTGCCTGCAAGCCCTGCAGCTTCTCTCTGAGCTGTTTGAGGAAGTGATGGACTCCTCCCTGGGTGCCTCTGTGCAGCCGTTCACCGACCTGCTGCTGCCCGTCCTGCTCGACCTGCTGCAGCCCCCGGAGCTGCCCCTTGAGGAGCAGCTGGCCCGGAGGAACTGCGCGAGGGCCGCCTGCGCCATCGATGAGGCGCTGAAGCTGCAGGTGTCTCGGAGGCTGACGGCCCGGCTGTGCGTGTCCCAGGTGGAGTACCTGTTCTCCAGCAGCAGGATGGACGTGGGCTTCGACTGCCCCATGGCGGAGTCTGACCTCAGCCAAGCTGGGGCCACTGTGGTGCTGAAGATGCTGGACCTGATGAGCCGAGTCAAACAGGTGGTGCCGGACATGGAGACCAGCTTCTACAGAATCCTACAGGACCAGCGGCTTGTCACGCCCCTGTCCGTGGCCCTGACCTCTGACCGGCGGGAGCAGGTCCAGACCGCGCTCCGGATCCTGTTCGAAGCCGCCCCTCTGCCAGACTTCCCCGCCATTGTACTGGGGGAGAGTATAGCCGCCAACAACTCTTACCGGCTGAGGGAGGCGGAGTTCACCCCACGCAGGATGTCAGTGCAGGATCCGGCCCTGGCCACTCTGAGCAGACCCTGCGCGGCTCGGACCCCCAGCGTGGGCAGTGCCACGCAACACAGCATCCACAGCCTCATCGAGAGACTgcagactgggatggagATGAAAGAAGAAATCAAGGATGTGAGGATTTCAGAGATCATGGATGTGTACGAGCAGAAGATCTCGGCCCTGGCGTCAAAGGAGGGCCGCCTGCAGGACCTACTGGAGGCAAAGGCGCTGGCTCTGGCCCAGGCGGACCGGCTCATCGCACAGTACCGCTGCCAGCGTGCCCAGGCCGAGGCCGAGGCGAGGAAGCTGGCGACTCTGCTGAAGGATGCggagaggaggaaggaggagcTGTCCGGGGAGCTGAGCAGCCAGACCCTGGAGGCGGAGAGAGCCCAGGCCGACAtccagcagctgctgcagcacaACGGCCGGCTGCAGGCTGTGGCCGAGGAGCACCAGGCCCTGAGCGCCTCCTACAACGACGTGGTGCTGAAGTTCGGTGAATGTGAGAAGATGCTGCGAGACCTGCAGACTGCTCACAGCTCCTTAAACAAGCAAGCTGAGGCGATGAAGAAGCAAAATGACACTCTGAAACTGCAGCAGGAGAAGATGCTGTCACAGCTCGCAGGCAAGGAGGAGAAGATCCAGGCACTCAGCCAGAACCTGGaagacagagaaaacaaaatatctggctTGGAGCAAAGAATCCAAAGCCTGAAAGAAAAGGCAGAgctgagagagaaacagagcgAAGACATGGAAGAAACAATTGACATCCTGAGGAAAGAGCTGAACAAGACCGAGCTGGCCAGGAAGGAGCTCAGCATCAAGGCGTCCTCCCTGGAGCTGCAGAAGTCGCAGCTGGAGACACGTCTGgagaagagggaggaggagcTGAACAAGCACTCGCACATGATTGCCATGATCCACAGCCTGAGCAGCGGCAAGCTCAAGACTGACAGCGTCAACCTCAGCCTGTAGCTCCTGCTCAGGGGCGCCTCTCATGCCCTGCCCCTTGCACTGCTGCCCCCGCACTGCCGGCCCGGGTGTGTGACTCACACTGCGGTGCAACCCAGAACTGAACACGGTCGACATGGGCCTGTAGAGCCCGCTGGAGAGATGTGGTCCCGGGCGCTGCCAGGGCTGGAAGACTGACTGAGAAGGCTGCCTCCCACACCCTGGCACTGCTGCAACGGCACTGTCTGTGACTCTCCCTGAGATTAGATTTGTGACTCGCAGCCTCCCTCAGCCTCCGACAGCCTCGGCGGGGGCCTGTGACCAGAGCGGCTGCGCATTGAGTCCCCTCTGCATCAGATTTAGTCACGTGTCCCATCATCCAAATGTCTGTTCCATTAGGAAAACAGAAAGGGAAGAGACAGGTTAGAGCAGACCCAGATTGTGTAAGAGGTGGTATATAAAGGTATTTAAGATAAAGTCGTACATCATGTTTGAACAGAAGTTGAGTGTCATCTCAGCCTGACCATTCTTTTTAATGGAAATTTTATCTTTCTTCATCTGTTTCCGACACATTTCtctaaactgtatttttatatcaaatgtgcaaaataGTAATGTCTCTTTGTGTATTCACTCTCCCACGCATTCCTCTTTTTACTATGGCctacttttcttttatttaataaacctCAGATGTCTCCGATGGTTCACTATGTAAGTTAATGCTCTGGGACCATGACTGGCATCTTTTAAGTGGTAAAGTGAAACATTTATTGAATTACcaatatgtgtttaaaaaaccAATCAAACCAGGAAATCAAATCACTGGGAGTTGACAgagtgtatttaaatggaagatGCTTAATCCTTTGAGGAGCTGGTGCGCTTACGCAACCGGGATGATTTTACATAACTGAAGTGCAGGCGGCCACGCCCTCTGCCCTAATCTGAGCCACCATATGGATAACGTTAGCAAGATAATATAGATTTAGGGCAGCTTGTTAACATACACTGGATTaggggagaaaacaaaaagcagatgttttcTTGGTTGAGAGTGGCTGCCCAGACTGGGGCTCCTGAGGAACCCCGGGCCAAGTGAACAGGGCGTCCTGTCTGGTGGACTCCCTCGTCTGCAGAGCTGCCGGCGGTCGTCACCATCGTTTGCAGtggaaaatgcaaatacatttcgATCGATGTAAATTAACGGGGTGGAAAGtgctttagtttgttttgcaataaagACATCCAACTGTGG

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17653 lncRNA downstream 9882 24716726 ~ 24780266 (-) True G14245
TU17623 lncRNA downstream 105613 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 171803 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 183827 24606108 ~ 24606321 (-) True G14214
TU17614 lncRNA downstream 188141 24601698 ~ 24602007 (-) True G14213
TU17733 lncRNA upstream 104927 24905121 ~ 24906546 (-) True G14311
TU17761 lncRNA upstream 207780 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 207962 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA upstream 207962 25008156 ~ 25010763 (-) False AMCG00016562
TU17860 lncRNA upstream 321896 25122090 ~ 25122375 (-) True G14400
AMCG00016545 mRNA downstream 3738 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016546 mRNA downstream 51026 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016538 mRNA downstream 223192 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016539 mRNA downstream 240023 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016534 mRNA downstream 397293 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016551 mRNA upstream 2542 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016552 mRNA upstream 75670 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016555 mRNA upstream 83709 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016556 mRNA upstream 130623 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016564 mRNA upstream 172853 24973047 ~ 25001455 (-) True AMCG00016564
TU17551 other downstream 473346 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 473346 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1089893 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1334337 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4654601 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 80954 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 211147 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 212170 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 280374 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 473470 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile