RNA id: AMCG00016552


Basic Information

Item Value
RNA id AMCG00016552
length 2262
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00016552
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24875864 ~ 24878227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACAAGCaggagcagcagagagagagagagagagagagagagagcaagggagagagagtgctCCAGTGGGGAGTGCAGAAaggggagagcagcagcagcagcagcaaacacAGCAGACATGGACCTGCATTGTGAGTGCAGCGAGCCGCCGCCGGCCGAGCAGCCGCCAGGGAGGATCAACAGGGCTGCCTTCAAGCTGTTCGGCAAGAGGCGGTCGGGCAGTGCGGTGCCCAGCATCTTCGGAGTGAAGAACAAAGGGGAGGGCAAAAGCTCGGGGAAGACGGGACTCGTTAGGAGCAAGACTCATGACGGATTAGCCGAGACGGTGGTGGAGGGCGTCAGGAAGGAGGAATCCTCCAGCAGCGACCAGCTGAGCTGCACGGTCCCAGTCAGGAGCGAGCCAGGCCCCGGTGTGGCAGCAGGCAGCTCAGTCACCAAGTCCCTGAGCTTCTTCTCCCTGTTGAAGAAGAACGGGCGATCGGAGGGCAGCGCTGAGCACAGGACTGGCAGTAAACAAAGGAAGGGGCTGAAGGGGCTGTTCAGCAGCATGCGCTGGCACAGGAGAGACAAGAGCGGCAGGGAGGACAGAGAGGAAGCggtgctggaggctcagccCCCCGCTCCTCCAGCCCCCCAGCGGCCCGACGCCACTGAGCCACAGACACAGGTGCTGCCCATTGCGGCCTGCAACAAGCCCCAGCCCCCGGCCCTGGCCCCGGAGGCTGTACAGGATGCCCCTGCAGAGACGTCCCCACAGGAGACAGCTGGGCAGCCAGCGGTGGCTAGGGAGGGTGGCAGGCCGCTAACTGCGATACAGAACGGGGAGAGCTCACCCAGGCAACCCGAGTCCCGGCCAGGCCCCAGCCCACAGCTGGAGCAGGGGTTTTCCACAGCGGGCGCCCCAGCCCCGTCCCGGGAGGAGGCAGCCACAGGGCAACTGAGACCTGTGACCCCGCTGCTGCAGCACAAATGCAAGCACAGCCGCCCCGAGGCTGCCCCCTTCTCCACAGCCCCCAGCATGACCGTCACCCCCCCACCTGAGGCCTCAGCTGCCGACCCCCCATCCGAACCCTCCATGGACCGCATTTGCTCCCTGTTTGCCGATGTCACCTCACTCAAGAGCTTTGACTCGCTAACAGGCTGTGGGGACATCATCGCCGACCCCGAGGAGGAGGCCGGTAGCGCGGGCAGCAGTGGCACTGGCAGCAGTGGGGGGGgggCAGCAGTGACGGCAGTGACAGCAGTGACAGGGGCAGGGGCAGTacggggaggaggaggtggggggttgATATTGGAGAAGGCCCTCCCTGCCCCTGTGAGAGCCAGGCTGGCCCCCAGGAAGGCCCAGGGTGGGGGTGTGGTGGCGTACCAAGGTGGGGGGGAGGAGATGGCCAGCCCTGATGAGGTGGATGAGGCTGACCTGCAGGGGTTCTGGGAGATGCTGCCGCAGACGGAGACAGAGGGGCCGCCCCACCAGCAGCCCAGGAAGGAGGCCCCTGCAACCCTTCAGCAGCCCAGGGCGGAGGCCCCTACAACCCGCCAGCAGCCCAGGGTCGAGGTCCCCGCAATCCCCCAGCCCCCCAAGCCCTCATACTCTCCTCCCCAAGCCTCCcagcccccccagccccaccaCAGAGCTCGAATGGAGAGGTGTGGCGCCCCTGCGGTCAAGGCACTGGGACTCAGCAAGATCCCAGTGAGTGGAGGCAGCAGCAGAGCTGGCAAGAGCCACAAGGAGCCTGAGGAGAGCCGCGACAAGGAGGCACAGGACGGCGTGCCCAACAGTGACGAGGGCTACTGGGACTCCACCACGCCCGGGCCCGAGGAGGAGAGCAGCAGGGGCAGCTTCCTGGCCAAGGAGTCCCTGCCGCGGGACAGCTGCAGCGGTGATGCGCTGTATGACCTCTACGTGGACCCGGACGAGAGCCTGGCAGGGAGGGGGTCGGACGAGGACATGTCGTCGCTGTCTGCCTGCGAGCCCAAGCTGACGCCACCCCTACAGGCCACTTTCCGCTCCCTCAAGGGCAGTGCCAGTCTGCCCCGTGACTCCAAAATCCCCGTGAGCGTCAAGCAGGTGCCCTCGCACTCGGCCAGCCACGGAGCACTAGTCCCCTGCCACGCCCCCGCCGGGCACACCCCCCCCGCCAAGGCCGAGCTGCCGCGCACCAAGATCCCCGTGCCCCGAGCGCTTGGCAAACGGACTGGCAACAAGACTGTGGGCGGGAAACTCTCCCACCACGAGCACATCCGGAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17653 lncRNA downstream 95598 24716726 ~ 24780266 (-) True G14245
TU17623 lncRNA downstream 191329 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 257519 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 269543 24606108 ~ 24606321 (-) True G14214
TU17614 lncRNA downstream 273857 24601698 ~ 24602007 (-) True G14213
TU17733 lncRNA upstream 26894 24905121 ~ 24906546 (-) True G14311
TU17761 lncRNA upstream 129747 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 129929 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA upstream 129929 25008156 ~ 25010763 (-) False AMCG00016562
TU17860 lncRNA upstream 243863 25122090 ~ 25122375 (-) True G14400
AMCG00016551 mRNA downstream 65952 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016550 mRNA downstream 75670 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016545 mRNA downstream 89454 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016546 mRNA downstream 136742 24721189 ~ 24739122 (-) True AMCG00016546
AMCG00016538 mRNA downstream 308908 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016555 mRNA upstream 5676 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016556 mRNA upstream 52590 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016564 mRNA upstream 94820 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016562 mRNA upstream 132581 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016565 mRNA upstream 178333 25056560 ~ 25057570 (-) True AMCG00016565
TU17551 other downstream 559062 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 559062 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1175609 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1420053 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4740317 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 2921 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 133114 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 134137 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 202341 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 395437 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile