RNA id: AMCG00016554


Basic Information

Item Value
RNA id AMCG00016554
length 2973
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00016554
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24895102 ~ 24910014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAGTATCCCAGCATGCCCCACCGGAAGTAGCTGTCGGCGCGGATACGCATAGTAACACTGTGGTTGCGTCCAGATTcgccttttttttgtttttgttttctctctcttgtgaAATAAACATGTTTGCGTTTAGGTTAGCGCGTAGATAGCACACCGCGGCCTAGCTCTCCTCTCTTTCCCCGCAGAGAAGTCATCGCCGTGGGTTTTATCTCTGCCGAGTCTGTAAACGTGCACAGCCCCCCGGCCGGCGCCAAACCAATGTGGGCCTCCACGCCGCGGCCCGCATCGACTGTGAATCAGCCTGGCTGCTAATTTcggttatttattattattaaggtttGTTAGACATAGCTGCAATGTCCGGGTTTAACTTcggagccggagccggagccggagcctTGGGGGCGACTACAGCAGGGGGAGGGTTTTCCTTCGGAGCCACGACCAGTAACCCTGCGGCCACTGGTGGCTTCGCCATGGGAGGTATGGGCACAGGCACAGCTGTGGGcactgccaccaccaccaccacctcctcgCTGGGCCTGGGGGGCAGCCTCTTCGCACAGAAACCCACTGGCTTCTCCTTTGGGACCCCTACCGGCGGGGCTCCTGCCGCAGCAACCACCGCCTCCACCACTGGCTTCGCCCTGGGCTTCAACAAACCCGCTGCCTCTGCCACACCCTTCTCCCTCCCGGCATCCTCTGCCTCTGGGGGCCTCACTCTGGGggccacccttgcctccacagCTCCTCAGGCCGGTTCTACTGGCTTTGCCCTGAATCTGGGCAGTGCCATTGCTACGTCTGCTCCCGCCTCCACAGGCCTGACGCTGGGCTCCACGCTGACGGGGCTCGGCTCCACGCTGACGGGGCTCGGCTCCAGCCTGTTCCAAAACACAGCCGCTACAGGGCTGGGCCAGGCCTCCCAGGGTCTGTGGCTGGGCACTCTGGGCACCGTCACCACCAGCAATCCCACATCCTCTGCCAGCCTTGGCCTTGGGGGTGTCGACTTCAGCACGTCTTCTGAGAAGAAGAGTGATAAGTCATCCGGCGCAAGACCTGAGGACAGTAAAGCCTTGAAGGACGAGAATCTTCCTCCAGTGATCTGTCAGGATGTGGACAACTTCCAGAAGTTTGTGAAGGAGCAGAagcagctgcaggaggagaTCAGCCGCATGTCCTCCAAGGCCATGCTGAAGGTGCAGGACGACATCAAGAGTCTGAAGCAGCTGCTGTCTGTGTCCGCCAGCGGGCTGCAGAGGAACGTGCTGGCCATCGACAAGCTGAAGGTGGAGACCGCCCAGGAGCTGAAGAACGCGGATATTGCGCTGCGCACACAGAAGACCCCCCCGGGCCTGCAGCACGAGAACTCGGCACCCACAGATTACTTCCGGGGGCTGGTGGAGCAGTTTGAGCTGCAGCTGCAACAGTACCGTCAGCAGATCGAGGAGCTGGAGAACCACCTCACAACTCAGGCCAGCAGCTCCCACATCACACCTCAAGATCTGTCCATGGCCATGCAGAAGCTGTATCAGACCTTCGTGGCTCTAGCTGCGCAACTGCAGTCGGTGCACGAGAATGTAAAGAACCTGAAGCACCAGTACCTGGGCTACAGGAAGGCCTTCCTGGAGGACTCAACGGACGTGTTCGAGTCCAAGCGGGCGGCCAATAAAAAGTGGGAGAGCGGCCCGCGCGTCACCACCGGACCCACGCCCTTCAGCAGCGTTCCGAACGCAGCGGCTGTAGCCATGGCTGCCACACTAACTCAGCAGCAACAGCCCACTTCAGGCTCGCAGCCCGCCCTGGGAGTTAGTTTTGCAGCTCCTTTTGGCTCAGCTTTGGGCACGGTCTTGCAGTCAAATGACTTCGGAGCGTTTGGCGGGGCCCCAGGCTTTGGAGTGGCCGGCGCGGGAGGGTCGTCCTTTGGTTTCGCTACAACCAACAAACCAACTGGGGGCAGCCTCAGCGCAGGCTTCGGCAGCTCCAGCACCTCTGGGTTTAACTTCAGTAACCCCGGCATCACGGCCTCGGCGGGACTGACCTTCGGGGTGTCCAACACACCGGCCACGGGGTTCGGTGCGGGAGGGCCACTGCTGCAGCTCAAGAAGCCCCCCGCAGGCAACAAGAGGGGCAAGAGATAGAGCCCCTGGGGTAACTGGGGAAAAGGATAAAGCAGGGGGCTGAAGGCCAACCCCACGTTGTTACTGTTGAAgatatctatttttatattgggggtgctggggagggggggctgcACGATTTGGATCAGGTTTAGTGTAGTtcttggttatttttttttttgtatgttttttcttttaatgtaatgttcattttgtttctgttagtttattgttaatattatttggGGAATCTCTGCTGCAGATCCAGAGCTGGCTGCCAGGGACTTCACTGGCCTGTTATCTGGTTAATGGCGTAAAGGGTGCAAGTGTTTCAATTTTGCCCGTTGTCGTTTTTTCTTCTCAATGGCTAACGTCACACTTCTTTTTGGacaattaatttgttgtttcaAGGGGGTCAAGAAATCATGGAATATTCCCTaacatcagttttgtttttgtgtttgctggATGGCCCAAAGATCCAAAATCGTGAGTAGTGCCACAGGGGGGAGAGCTAAAGTGAATATTGTTATTTTCGCGCTGCACTTTTGTCTCGACGCAGGTAGTGTTGTAGCGAGAGCCTCTTGGTCTGTGTGTCGTAGTCCTGGGTGTGAGGTGTTGAGGTAtctgttagttttgtttttctgagttTCTGTATTGTGAATCCCTCCCTCCTTTCTAAATGGAATAGtgtaagaaaaaggaaagatttttctttttcgtttgtttttctaaaatgtctgtttttttgttttgttaccaaactaaataaaacattttgctatACTTGTACCAGAATTTGTgtgtaaacatgtattttccaacttgaaagagcaaagaaatttaataa

Function

GO: NA

KEGG:

id description
K14307 NUPL1, NUP49; nucleoporin p58/p45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 475495 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 519275 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 519275 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 520071 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 556254 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 173759 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 212069 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 234568 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 359824 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 447873 25357887 ~ 25359035 (+) True G14444
AMCG00016549 mRNA upstream 28678 24825609 ~ 24866424 (+) True AMCG00016549
AMCG00016548 mRNA upstream 71590 24811850 ~ 24823512 (+) True AMCG00016548
AMCG00016544 mRNA upstream 133993 24743346 ~ 24761109 (+) True AMCG00016544
AMCG00016543 mRNA upstream 175518 24712332 ~ 24719584 (+) True AMCG00016543
AMCG00016547 mRNA upstream 182871 24700745 ~ 24712231 (+) True AMCG00016547
AMCG00016553 mRNA downstream 1997 24912011 ~ 24920036 (+) True AMCG00016553
AMCG00016561 mRNA downstream 106026 25016040 ~ 25020221 (+) True AMCG00016561
AMCG00016559 mRNA downstream 110831 25020845 ~ 25031053 (+) True AMCG00016559
AMCG00016557 mRNA downstream 124924 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016558 mRNA downstream 170660 25080674 ~ 25085097 (+) True AMCG00016558
TU17581 other upstream 333295 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 784920 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7773170 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8409099 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 8409954 16484355 ~ 16485148 (+) False AMCG00016329
TU17758 other downstream 97948 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 223184 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 240469 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 240469 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 240469 25150483 ~ 25157461 (+) True AMCG00016566

Expression Profile