RNA id: AMCG00016556


Basic Information

Item Value
RNA id AMCG00016556
length 1479
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00016556
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24930817 ~ 24953633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGCTCACAGCCAGATATATGGAAACCCGTTTGAACCCCTCGCAGAAACTGAGGGGACTGAGATAGGGCGGACTGTGGAGCCAGGACCAAGcagggagcaggaggaggagcctCTCAGACCTTCGAAGGGAGCATGGCGGTCCTCCTGGCTGCACTTCAGTGTGGGAAACAAcgccCTGGTTTCGGTCATCAGGCACGTACACCACTTTCAGGTCTTAATATTGGTTGTGTTTCTGCTGAGCGCTGTGAGGACAGAGTTTTCGGGAAGCCAGGGGGCAGGCACTGCTGTTCAGTACGGGGATCGGCTGCCGGCAGAGTGGGCGGAGGGCGGAGGAAACAATGAGGCTCCTGCCCTCGCAGATGGGCCTGGCGCGCTGACAGGCCTCCCTGCCCCAGTGACAGTGATGTATGGCTGCACTCTGGTCTGGGCCACTCAGGGCTCCGTGCGTTTTTTCACAGCCGTTCTGGACAGGGGCTGGGGTTTCTCCGGCGGTGTGGGGTGGCTGCCTCTCTTGGGTTTCCAGTCTGAACCAGAGAGACGCTGTCGGACTCCAAACCCCAGCGTGAAAACTGCCCCAGTCCTCTTCCGCGACGATGCTCGGGTGTCTCCGCTGCAGAAGTCCGAGATAGTGGACATGGTGAAGAAGCACGTGAACGCCATCACTCTGGCCATCGGGGACGGCGCCAACGACGTGGGCATGATCCAGACGGCGCACGTGGGCGTGGGCATCAGCGGCAACGAGGGCATGCAGGCCACCAACTCCTCTGACTACTCCATCGctcagCTGTGGTTTGCATTCGTTAATGGATTTTCTGGTCAGATTCTGTTTGAGAGGTGGTGCATTGGGCTGTACAACGTGGTGTTCTGGGGTCACTGCATCAACGCCTTGGTCCACTCCATCATTCTCTTCTGGTTTCCCTTGAAAGTGCTGGACCACGACTCCGTGTTCGATAACGGTCACGCCACCGATTACTTGTTCGTCGGGAACATTGTCTATACGTATGTGGTGGTGACCGTCTGTTTGAAAGCTGGCCTGGAGACAACAGCCTGGACCAGATTTAGCCACCTGGCAGTGTGGGGCAGCATGCTGCTGTGGATGGTGTTCTTCGCCGTGTACTCGGCCATCTGGCCCTCCATCCCCATCGCGCCGGACATGCTGGGACAGGCTGGCATGGTGATGAAATGCTGGAGCTTCTGGCTGGGTCTGGTTCTTGTTCCCATCGCCTGCTTACTGAAGGACATAGCCTGGACAGCGGCCAGACACACCTACAGGAAGTCTCTGCTGGAGGAGGTTCAGGAGCTGGAGGCGCGGGCGCAGGACCCGGGGGCAGCCGTGCTGAGAGACGTCAACGGACGCAggagggagagaaggaggaaaggggaggaagagagggagaggagagggaaaatttggagaaggagaaggagggacAGGGAAATGGAGGAAAGGGAACAGGGGGAGGAAGAGgcatag

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016787 hydrolase activity molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17733 lncRNA downstream 24271 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 150551 24716726 ~ 24780266 (-) True G14245
TU17623 lncRNA downstream 246282 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 312472 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 324496 24606108 ~ 24606321 (-) True G14214
TU17761 lncRNA upstream 54341 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 54523 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA upstream 54523 25008156 ~ 25010763 (-) False AMCG00016562
TU17860 lncRNA upstream 168457 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 451262 25404895 ~ 25405101 (-) True G14472
AMCG00016555 mRNA downstream 36398 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016552 mRNA downstream 52590 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016551 mRNA downstream 120905 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016550 mRNA downstream 130623 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016545 mRNA downstream 144407 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016564 mRNA upstream 19414 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016562 mRNA upstream 57175 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016565 mRNA upstream 102927 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016563 mRNA upstream 119537 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016570 mRNA upstream 152699 25106332 ~ 25107565 (-) True AMCG00016570
TU17725 other downstream 48719 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 614015 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 614015 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1230562 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1475006 23455092 ~ 23455811 (-) True G13962
TU17766 other upstream 57708 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 58731 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 126935 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 320031 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 799362 25752995 ~ 25754472 (-) True G14534

Expression Profile