RNA id: AMCG00016558


Basic Information

Item Value
RNA id AMCG00016558
length 2131
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00016558
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25080674 ~ 25085097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attattcagcgCAGGAGAGTGAATCACGGCGATTGAGAAGTATGTGTATTTTCTAGTCAGGCGGCAGTGAGGACCACCTGAATTACAATGTGTAAGGCGGAGCGAGGGGTCCTGCACTCTCTCTTTCCGCCGGACCCGCCATCTTGCGAAGAAGCAGGGTTAAACAGCCAACATGACGAACACCAGAGGCAAGAGGAGGGGGACGAGGTATATGTTCGCCAGGCCCTTCCGTAAACATGGTCCCGTCCCTCTGTCCACTTACATGCGTATCTACAAGAAAGGAGATATCGTTGACATCAAGggaacagggacagtccagaaGGGAATGCCCCACAAGTGCTACCATGGCAAGACTGGCAGGATTTACAATGTGACCCAGCATGCTGTGGGCATCATTGTCAACAAGCAGGTCAAGGGCAAGATCCTGGCCAAGAGAATCAACGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGCTTCCTGCAGCGAGTGAAGGagaatgagaagaagaagatcGAGGCCAAGGAGAGTGGCACCTGGGTGGAGCTTAAACGCCAGCCGGCTGCTCCCCGTGAGGCTCACTTTGTCAGCACCAAGAACAACGAGCCCCAGCTGCTGGAGCCCATCCCCTACGAGTTCATGGCCTAACTGTCCCGCACACCCAATAAACACGTTCACACAAATGTCCggttgcctgtgtgtgtttctctagACTCGGAAATGCAGATTAATTTCCCAGAGCAGTGATGGGTCAGAGTGTGCGTCCGCCTCCGCTGTGGTCAGTGCTGCTGCTCGATGATGCTCTTCCTCCTTCGATTGCCCTGAGCGGCAGTGTGAGATTGAATATATTTCACCGGTGAACTGAGAGCAGACCAGCACTGATGCGCTGGTGCCTGGGCAGCCCCTCATGGGTCAGTGTAGTGCAGGGCAGGGCTGGGCAACTGGGGTCCTCACAGGTGGCTGGTTTCTATTCCCTGTCAGGGttttattacttatttgaaGTAGTTATGAGGAAAATAAGTTGGATTACCTGTTCATTCTGAGTCTTGATCAGATTGCTAATTGAAGTTATAAATGCTGCAGGAGCCCAGCTCCAGCACTGCAGCTGCAGAGCCCTGTCCCGAGCCTCACAGTACCTCCCAGTTATGGGTTTTAAGCAAAAGTGGTCTTCATTATAGTCAGGAGAGTCACTCTCCTCTGCATTGGTTTAGTTTAAAACATTCTGAATAGCCCCCTGTGATTTTAGTAATGTTTACATCTCTGAGGGAGAGAACAACTGAACTAATAATAGACTGCCCTTCTGTAAACCTTAAAAAGCctttgtgcattaaaaaaaaaaaagtttacattcTGTGGCTCCGCGGTGCCGAGGACCTGTATGATCTTTTGATCTTGTAGAGGCTTCTGCAGTAATGTAGGATTAGCCTTTGAAATGCCAATACTATCCCTGCACTTAATCATAACTGCGTCCTGGTGCGTGGCCCTGCTGAACGCTGTGTATTGTCTCGCTGCTGTTGGTGAAGACACTAATGGCAGGGACTGTTTCAACTGAGTTTGTGTTAAATACACTCAGTGCAGTAGGAAAGGGCCAAGAATGGGTCCACAATGgttcagtatgtgtgtgtatacacgtGTATATATCCATCCTAGCAGACCCATTTAAAAGCCTCTAtaacagattaataaaatgtatctgcaacagtttaacttttaataaatgcttttattggATCTTTCTCTTCCATCAAGTATGTGGTCTAAAAGCAGTGTGGGTTAGTGGCCCCTCTGCTTTAGTGTGACTGCAGTGTGGGTTAGTGCCCCTCTGAATCACTGCTGGCAAAGGCGGGGCAGCTGTCTCTCGCTGACAGCCGGGCTGTGTGACCCGGGCAGCCAGCTCTGATTGCCCATCATCAGTGCGGCCCTGGGGCTGATTGCTAATTGCAGTGCTGATTGCTGTGCTGATTTCAGGGGCCTCGTCCAGAATATCAACACCACTGCAGAAGCCCAGCAGCAGTCTGAGAGCTCTGAATTAATTTCCATGGTTTCTGATGCTGGCAGTAGAAAGAAGTAAGATGTCGAATTGAGATTCTAATAAAGAGCTGAGTTAAATGAGagtttccttgt

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02889 RP-L21e, RPL21; large subunit ribosomal protein L21e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 661067 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 704847 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 704847 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 705643 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 741826 24336970 ~ 24338848 (+) True G14136
TU17796 lncRNA downstream 36986 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 59485 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 184741 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 272790 25357887 ~ 25359035 (+) True G14444
TU17914 lncRNA downstream 275374 25360471 ~ 25360808 (+) True G14445
AMCG00016557 mRNA upstream 31122 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016559 mRNA upstream 49621 25020845 ~ 25031053 (+) True AMCG00016559
AMCG00016561 mRNA upstream 60453 25016040 ~ 25020221 (+) True AMCG00016561
AMCG00016553 mRNA upstream 160638 24912011 ~ 24920036 (+) True AMCG00016553
AMCG00016554 mRNA upstream 170660 24895102 ~ 24910014 (+) True AMCG00016554
AMCG00016560 mRNA downstream 2514 25087611 ~ 25088937 (+) True AMCG00016560
AMCG00016568 mRNA downstream 18590 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016566 mRNA downstream 65251 25150348 ~ 25157447 (+) False AMCG00016566
AMCG00016567 mRNA downstream 97134 25182231 ~ 25183232 (+) True AMCG00016567
AMCG00016576 mRNA downstream 115045 25200142 ~ 25200540 (+) True AMCG00016576
TU17758 other upstream 69987 25007962 ~ 25010687 (+) True G14326
TU17581 other upstream 518867 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 970492 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7958742 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8594671 16484355 ~ 16486003 (+) False AMCG00016329
TU17806 other downstream 48101 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 65386 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 65386 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 65386 25150483 ~ 25157461 (+) True AMCG00016566
TU17920 other downstream 285199 25370296 ~ 25391840 (+) False AMCG00016584

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045557 False 617 mRNA 0.50 6 NC_007135.7 21621654 ~ 21625525 (+)
grasscarp (Ctenopharyngodon idella) CI01000018_04613416_04615346.mRNA True 690 mRNA 0.45 5 CI01000018 4613223 ~ 4615360 (+)