RNA id: AMCG00016559


Basic Information

Item Value
RNA id AMCG00016559
length 2807
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00016559
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25020845 ~ 25031053 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGTAAATCTAAACCAAGCATTCTGTGACCAGAGGATCGGTCATCCTCACACACTGGACAAGCAGCAGCTGGTTGTGTCTGCACTGAGAGCCAGGCTAAGTGCAGGCGGGCAGGATGTGGTCGAGGCCAGGAGCAGTAGGCCCGACGTGTGTCGCTGCTCCAGCCGAGGAGCCCTGCTGTCGCGGTGGGGGATCAGGGTGACAGTGAGGAAAGATGACAAAGACTACGCTTTAAAACAGATCGAGGGTACAGGGATATCCATGTCCGCCTGCAGGGAAATCGCACACATTATCAAGTTCCACAGAGCCTCCAAAGCCAACAAGAAGCCCCTGCAGCTGCCACGGGGAATGGTGAAGTCGCTACTCTACCAGATCCTGGACGGCATCCACTACCTGCACGCCAACTGGGTACTGCACAGGGACCTGAAACCTGCCAACATCCTGGTGATGGGCGAGGGCCCCGAGAGAGGCAGAGTCAAGATCGcTGACATGGGCTTTGCGCGGCTGTTTAATTCACCACTGAAGCCTTTAGCTGACCTGGACCCAGTGGTCGTCACGTTCTGGTACCGGGCCCCGGAGCTGCTGCTGGGGGCGAGGCACTATACCAAAGCCATCGATATCTGGGCTATAGGCTGCATATTTGCAGAGCTGCTGACGTCCGAGCCCATCTTTCACTGTAGACAGGAGGACATCAAGACCAGCAACCCCTACCACCACGACCAGCTGGACCGCATCTTCAATGTCATGGGCTTCCCAGCTGatAAAGACTGGGAAGACATCAAGAAGATGCCTGAACACTCGACGCTGATGAAAGACTTCAGGAGGAACACGTACACGAATTGCAGCCTTACGAAGTACATGGAGAAACACAAGGTGAAGCCAGACAGCAAAGCATTCCACTTGCTGCAGAAGCTGCTCACGATGGACCCAATCAAGAGAATCACCTCTGAGCAGGCCATGCAGGACCCCTACTTCCTAGAGGACCCCCTCCCCACGTCAGATGTCTTTGCTGGCTGTCAGATTCCATATCCCAAACGGGAGTTTCTCACAGAAGAGGAACCGGAGGACAAAGGAGACAAAAAGAACCAGCAGCAACAGCAGGGCAACAACCACACTAACGGGGCGGGCCACACCGGCAACCCCGACAACAGCCACGCACAGGGGCCCCCTCTCAAGAAAGTCAGAGTGGTTCCTCCCACCACTACCTCCAGTGGGCTCATCATGACCTCAGACTACCAACGCACCAATCCACACGCTGCGTACCAGAACCCAGGACCAAGCACAGCACTACCACAGAGCAGCATGGGCTACTCCTCTACCTCTCAGCAGCCCCCACAGTACTCTCACCAGACTCACCGGTACTGAGGGATGCCTGTCTGCGCCACcactcctctcccctcccctcctcccctacCCCCGTCCCTCTCCTTCCTCATCCCCCAACGCTGCAGGACGCACCTGGATCACTGAACACCGGGGCCTGGCCTGCCAGGAGAATGTACTGTGCTTCTGCACCCCGCCATACTGTTCCAGGACCCAGCTGTCCATCACCACCCggactgagggagggagagggagctgtGACTCGGGAGCCGTGACTCGGGAGCCGACGATTCATGatgtggaggggaggggaacGCAGGGTTGTGGCGCTGACAGACGCTGCGTGTGCCGATCGCATGGCTCTCCCTCGTGGCCCATCGCCCCCTTCCACGCCCCGGCTCCCCGTCAGTGCCTCCCCCGAACGGCTGACTTTTAGCAGTTTTAAAATTTAAAccatgaatgaattaataaataaaaatatggaggggaaaaacgaaaaaaaaacaaataacgcTGTGAGTGCTCGAGCCAGGTGTGTTTTATCTGTTACTGGTGAGTTGACCTCTGACCCacggaagaaagaaaacaaaccacagtCCTGTAACTGGTACTTGAATTTAACAGTCTCATCGTAAACGTGAATAGACTCGGACATATAGGAGGTGAAGAGGTGAGGACATTCTGAACGTGTGGTACACGTTGTAGTTCATTGGGACTATTATGGGTTggttctctttattttattattattattattatgcgtATTGCTATCTGGCCAGTCCAGCAGGGTGTGAGCTGAGCTGAGTGCACTGCAGGCCGCAGGTCCAGTCTCGCCTCACACACTGCCTCCCCTTTGTTCCCCGGAGACTGCCAACGTCTTGGTCACTCTGACAGTAGTTGTTCTCTTTGAGTTTCCTTTAAGTTGCCTGATTCCACAGCTGCTACGTCACTGACAGTAATCGCGCTGGGCTCTGCCCCCCTGCTGGTCTCCACAGGCCAGGCTGTGCTGGGTGGGCAGTGCCCAGGGGGTGCTGCTAGTGTGCGCCATGCTTTCAGGCCAAGAGGCGCAGAGTAGCGATTCTCACCACCGCTGCTAGAAGCGCACATCTCCATACAAGTGGtcttagtttaaaaaaataaaaagtgaatttagtaaatgtatttagagaagtacatttttctttgttttgttagtttgttttaattctgataatatatatattataaaaaaaatctgaacatgCTCCCACAGTTTAGGAGTGCCCCATATTACAGCCAGACAAAAGAGTTGTGGGTGAGCCTTAGCACTTCATGAatccaattttaaaaatgtaacatgcattgtactgtactgtattgaaatattttacatgaatGAATCAAGTATTCTGACAATAAAGGCTAAAACCTTCACTGCAGGGCGTATCTGTGGGCGGGGGGCAAGGTCACAGTATAAAAGccattgtgaaaataattaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG:

id description
K02208 CDK8_11; cyclin-dependent kinase 8/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 601238 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 645018 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 645018 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 645814 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 681997 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 52720 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 91030 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 113529 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 238785 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 326834 25357887 ~ 25359035 (+) True G14444
AMCG00016561 mRNA upstream 624 25016040 ~ 25020221 (+) True AMCG00016561
AMCG00016553 mRNA upstream 100809 24912011 ~ 24920036 (+) True AMCG00016553
AMCG00016554 mRNA upstream 110831 24895102 ~ 24910014 (+) True AMCG00016554
AMCG00016549 mRNA upstream 154421 24825609 ~ 24866424 (+) True AMCG00016549
AMCG00016548 mRNA upstream 197333 24811850 ~ 24823512 (+) True AMCG00016548
AMCG00016557 mRNA downstream 3885 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016558 mRNA downstream 49621 25080674 ~ 25085097 (+) True AMCG00016558
AMCG00016560 mRNA downstream 56558 25087611 ~ 25088937 (+) True AMCG00016560
AMCG00016568 mRNA downstream 72634 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016566 mRNA downstream 119295 25150348 ~ 25157447 (+) False AMCG00016566
TU17758 other upstream 10158 25007962 ~ 25010687 (+) True G14326
TU17581 other upstream 459038 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 910663 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7898913 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8534842 16484355 ~ 16486003 (+) False AMCG00016329
TU17806 other downstream 102145 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 119430 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 119430 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 119430 25150483 ~ 25157461 (+) True AMCG00016566
TU17920 other downstream 339243 25370296 ~ 25391840 (+) False AMCG00016584

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045554 False 2709 mRNA 0.48 13 NC_007135.7 21514283 ~ 21539344 (+)
grasscarp (Ctenopharyngodon idella) CI01000018_04563971_04573228.mRNA True 1674 mRNA 0.50 13 CI01000018 4563926 ~ 4573459 (+)