RNA id: AMCG00016561


Basic Information

Item Value
RNA id AMCG00016561
length 704
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00016561
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25016040 ~ 25020221 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGACTCCTCTCTGCTGAACAGCGGGCACGGGCGGCGCTTTTACGACACTGCCGTGCGTGGATTGGCGACGCTTTGCGACACTGCCGTGCGTGGATGTCTGGCTTTCTAGTGAGTAGATACCGGCAGCCAGAGCGAGAGAGCAGCGAGGGGCGCAGCTGCAGTGGCAATAAGCGCAATAGGGGGAAGAGGACATTGACATACCACCGGGGAGACGTGCTGCTGAAGACAACCGTGCATCTCTCCGACCGGGACGGACAGACACAGCGCCGCTACATGCAGCACATCCACCCGGCGTGGGAGCAGCGCCAGGGAAGACCGCTAACCGTTTGAAGCCCGGACTTAGCAGGAGTTGCTTCCCAAGCGGCGCTTTCGcctggttttgtttggtttggttttgaagACGCACTCATTACAGTGacgatacaaaacaaaaccaggagaCACGGAAAAATGGACTATGATTTCAAAGTGAAGCTGAccggagagagggagcgagtgGAGGACCTGTTTGAATATGAGGGCTGCAAAGTTGGACGAGGCACTTACGGGCATGTGTTCAAAGCCAAGAGGAAAGACGGCCCCTCCCACCGCCATGAAAGGGTTTCCTCTATTCCCGTGCCCATGGCTCTCTCATcagagaagcagcagcagcaggagtgGCCAAGCCAGACCCAGAAGAGCCACAGTCCAGCGGCCTTATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17570 lncRNA upstream 596433 24419358 ~ 24419607 (+) True G14177
TU17494 lncRNA upstream 640213 24370326 ~ 24375827 (+) True G14127
TU17497 lncRNA upstream 640213 24370326 ~ 24375827 (+) False G14127
TU17499 lncRNA upstream 641009 24370326 ~ 24375031 (+) False G14127
TU17511 lncRNA upstream 677192 24336970 ~ 24338848 (+) True G14136
TU17791 lncRNA downstream 63552 25083773 ~ 25085087 (+) False AMCG00016558
TU17796 lncRNA downstream 101862 25122083 ~ 25122392 (+) True G14354
TU17808 lncRNA downstream 124361 25144582 ~ 25144782 (+) True G14363
TU17836 lncRNA downstream 249617 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 337666 25357887 ~ 25359035 (+) True G14444
AMCG00016553 mRNA upstream 96004 24912011 ~ 24920036 (+) True AMCG00016553
AMCG00016554 mRNA upstream 106026 24895102 ~ 24910014 (+) True AMCG00016554
AMCG00016549 mRNA upstream 149616 24825609 ~ 24866424 (+) True AMCG00016549
AMCG00016548 mRNA upstream 192528 24811850 ~ 24823512 (+) True AMCG00016548
AMCG00016544 mRNA upstream 254931 24743346 ~ 24761109 (+) True AMCG00016544
AMCG00016559 mRNA downstream 624 25020845 ~ 25031053 (+) True AMCG00016559
AMCG00016557 mRNA downstream 14717 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016558 mRNA downstream 60453 25080674 ~ 25085097 (+) True AMCG00016558
AMCG00016560 mRNA downstream 67390 25087611 ~ 25088937 (+) True AMCG00016560
AMCG00016568 mRNA downstream 83466 25103687 ~ 25106170 (+) True AMCG00016568
TU17758 other upstream 5353 25007962 ~ 25010687 (+) True G14326
TU17581 other upstream 454233 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 905858 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 7894108 17116793 ~ 17121932 (+) True G13012
TU15942 other upstream 8530037 16484355 ~ 16486003 (+) False AMCG00016329
TU17806 other downstream 112977 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 130262 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other downstream 130262 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other downstream 130262 25150483 ~ 25157461 (+) True AMCG00016566
TU17920 other downstream 350075 25370296 ~ 25391840 (+) False AMCG00016584

Expression Profile