RNA id: TU17765


Basic Information

Item Value
RNA id TU17765
length 2608
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id AMCG00016562
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25007974 ~ 25015343 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctGAGTCCCCACCCCCCAGGGGACGTCTGTAAATACCGCTTTACTGTTATAACTATAAGATCCATTGTAATGAGCTGAAGGTAGAACCAAAAACATATGAGAAACAAACAAGGACatgcaacacaatacaacacgACAGGAGGAAactaaagtatatttttttagactttttagttttgtttttttgagttgttttttttccctctcttttttttttcccttttctttctttagatgCATCCGTTTACTACAGAATATCTTCCCAGCTTCACTTTTCATTCCTGTGCTGCTTCATAGAGGTCGATTGTTACAGGTTTTATCAGAGgaactaaaaaaactaaaagacgCTAGCAAACAGACACCTAGTGTGTAACCTTGACATTaacatattactgaaaataatggTTTAGGTTTTAGGTCACAGAGACTATAAACAAACCCAAGTCTGATCTGGAATACATTAAATAGTGACTGTCCTCTTTGGAccattacaacaacaataacaataaaacagtaggATTAACGGGTTTAAGTCCCCTCCATCTCTGCTTCATTTCAAACTCCAGACACACGACACGCAGGGCTGCCAGTCTTGGACGCCCAGCCCTCGGTTCAGCTGGAAGGCACGTTGAACAGTTTCACACGGACACCGTTGGCCTCCTGTCTCATTCTTAACGAAGGTAGAAATTCCTGAAGCTTGAAGACTGTagtgtttcttttatttccttttgtttggttttatttatttttaacccctGGTGACCCTGGGGTCCAGTCAGAGTGTGACCTGCCGATCAGCCGGCGCTGTTGGCAGGATTGCTGCCTAATAGAGCTGTATTGATTTTCCCAGCACATGGAGCAGAGAGGAAATATCCACAATGCAGCCTCGTAGAACGGTGGCGCGGAGTGATGGCCAGAGTCCAGCCCCTGTGTGGCGCCTGACCAGCTCCCTATCGCTGTGCTGATTGGCTGTCTAGGAGGATATAAATGGGGCAGAAAGCTCTGCATTGATTTCCCTGCTCATTAGCAGCCAGGTCACCCGGGTTCAGACATAACCTGCAAAGAGTTCGTGGTTACAAATTCCAAACGTTGTCCTTGACGTCCTGGAGAGGCAGGATGAGACCTCTAGGGCAAGTGTGGAGGCAGTGAGGGCCGGAGCCCAGGCCAGGGGGCTCCAGAGCACGGCTCCGGGGCTGTGTACTTCCTGGACATTGTGTGCCCACTCCGTCTAGATGGTTCCCTCTAGGGCAGTAGCTGTGCGCCACGTTTGAGGGCAGAGGGCAGCGGAAGATGCTTGCTGGTGACATGCCAGTATGGGCTGAGTGTCGTCCTTCTGGGAGATGCGCTTGCTGCAGGGCCAACTAAAACCCAGTGACTTgaactttttttaatggtttaattttacagttatttgtaatgttttaattacgAGTGTACCATTACAGCACTTGACGGTCTGAATCCCTGTTCATCTAACACAGGCCTCATGTAGCCTGAACTGCCGCCCATTCCATGccaatttattaaattaattattcaattgaGTAAACCCCTCTGCACTCTCCTGGGTCTAATGAAGGTGTTGATCTAGACCCCCCTGTGTATTGAGCCTGTGGGGATTTGGCCGGGAGGACAGTGGCTGGCACAGCGCTGGTCTGAGTGGACCGCCGGCCGGGAGACGTTGGCGAGCACCTCGGGGTCTGGGGTGCTATCCTGTGCGCCTGCTGGGGTCTGTTCTCCAGTCGGGATGTGTCAGGGGGCCCTGCAGGCACTTGGGCAAAACACCTGTGAGAGACTGCAGTTCGCAAGCCTgacccttttattttatttgtattatgatttcTGTATCTGTTCTTAATCCACACTACTGTTCGGGACATGGCGTCCTGTGTTCGTTGTGAAAGATCCAATTCTATGGTGCAGAGTCCTCCACGCTCACCGTCTGTAAGGCAGGAATGCAGACTGCCTGAACCATGTTTCATCAGGGCCAGTGGGGCTCTCCCTTTCAggttatttattaaacacataGGAAAATTGCACCAGTATTGTCCCTCGTTCTTGTGTTGGGTTTGTTTGTTCGGAATGGGTGGGTAGATTCCAGTGAGTGAACTTGCACCCTTTCAAACCATATCTGGATCAACATTTTGTTAAGGCGTGATTGGTTAACTGTCTATCTGGGTCATAGGCACTGTGCTTTACAGTGTGACCTGGGAACCCCAAGGTTGTGTGTTTCATGTGCAGGATCACAAAAGCACCACAAGAGGGCATTATCTGCATTATTAGGACTATCCCTGAAGTTGAAAAGGGATTTCCCTGCGTAGACCACTGCCTTAAAGACTTGCAGGCATTTTTATAATGGGTGGCAGGGAGCAAACAAGGATGCAAATGTCcccatttattttccactggttGGCTTTTGCAGTCACAATAAGGTATCATGGGGGAAGGGAgttcttaaatgtttaaaatgagcaCTGATTTTAGCAACTGCCCCCGTTTTCTACATGCATGCTGTAGTCCGTGTTAAGAGCAGAGGTGAAGCCAGGAGCCTTGTCCTCTTGTCTTGTTGCTTTAGCCTGCCCCCTGTCCATCTGCGCTGATGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17733 lncRNA downstream 101610 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 227890 24716726 ~ 24780266 (-) True G14245
TU17623 lncRNA downstream 323621 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 389811 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 401835 24606108 ~ 24606321 (-) True G14214
TU17860 lncRNA upstream 111327 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 394132 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 402553 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 506226 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 506226 25516989 ~ 25520096 (-) False G14487
AMCG00016564 mRNA downstream 6701 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016556 mRNA downstream 54523 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016555 mRNA downstream 113737 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016552 mRNA downstream 129929 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016551 mRNA downstream 198244 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016562 mRNA upstream 45 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016565 mRNA upstream 45797 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016563 mRNA upstream 62407 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016570 mRNA upstream 95569 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016569 mRNA upstream 114020 25124783 ~ 25133808 (-) True AMCG00016569
TU17725 other downstream 126058 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 691354 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 691354 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1307901 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1552345 23455092 ~ 23455811 (-) True G13962
TU17766 other upstream 578 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1601 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 69805 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 262901 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 742232 25752995 ~ 25754472 (-) True G14534

Expression Profile