RNA id: TU17768


Basic Information

Item Value
RNA id TU17768
length 664
RNA type TUCP
GC content 0.39
exon number 4
gene id AMCG00016562
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25007974 ~ 25015343 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATCCCAGACAGCAGGGAAGGGAGAACAGGACTCGTCCATATTCCAGCTGAGCTTTCAGCAAGCAGGAGTGGTTTCCGTGGCGATGGACCCTCCCAGCCCAGCGGCAGACCGCGCGGCCGGCGGGCTGGATGAGCGGCGGCGGCAGCAAGAGCGGCTGCACCGTGAGGAGGCATACTACCAGTTCATCAATGGGCTGAGCGAGGACGAGTACCGGCTCATGAGGGACAGCAACCTGCTGGGCACGCCAGGTGAGGTGACCGCGGAGGAGCTGAGGCAGCGACTGGATGGGGCAAAGGAGCGCCTGTCCTCTCAGCCCAGCGTGGATGCCGGCCCACCTGCAGAGGAGGACAGCAGCAATGGAGCCGGTGAGCCAGCTGGGGAGGCCTCGAATGGTGACTCTCTCCTGGAGTGGCTGAACACGTTCCGGCGCACGGGTAATGCCACGCGCAGCGGGCAGAGTGGCAATCAGACGTGGCGTGCGGTGAGCCGCACCAACCCGAACAGCGGTGAGTTCCGCTTCAGCCTGGAGATCAACATCAACCACGAGCAGCCCGAGCCGGCTGAGCTTGACCCGGGTGACGCCCCTCCGGCCTCACTCACcgccccccaccctccaccaCGGGTCACCCAGGGCCGCCGAGCGCAGGCAGCCGCGGCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17761 lncRNA downstream 1109 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 1109 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 1601 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 105818 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 232098 24716726 ~ 24780266 (-) True G14245
TU17860 lncRNA upstream 106747 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 389552 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 397973 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 501646 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 501646 25516989 ~ 25520096 (-) False G14487
AMCG00016564 mRNA downstream 10909 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016556 mRNA downstream 58731 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016555 mRNA downstream 117945 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016552 mRNA downstream 134137 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016551 mRNA downstream 202452 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016565 mRNA upstream 41217 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016563 mRNA upstream 57827 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016570 mRNA upstream 90989 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016569 mRNA upstream 109440 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016573 mRNA upstream 199724 25215067 ~ 25218658 (-) True AMCG00016573
TU17766 other downstream 586 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 130266 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 695562 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 695562 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1312109 23699149 ~ 23700255 (-) True G13969
TU17849 other upstream 65225 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 258321 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 737652 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 1066160 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 1141178 26156521 ~ 26159442 (-) True AMCG00016616

Expression Profile