RNA id: AMCG00016563


Basic Information

Item Value
RNA id AMCG00016563
length 2406
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00016563
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25073170 ~ 25080493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTGGTCAAttggaaacactttaaaaacagcGTCATAAAAAGCAACATTGAGCCCTGCGTGATTACCATTGCAcaaacttttaacatttaaggATACCTTTAATTATACCCTggatatataattattattcctaTTAGGCctgtaatgaaaattaaaagttaTAAAGTATTTAGTTGTGTTATGTGGCCACACTGCTCAGTGTGAGGGGATGCGGCGGCGGCTCTAGGACCCGCCAGCGCCGGACGGGCGCCCCTGCCTGCAGTCGGGCTCCGCTCGCTCGGCCTCCCTGCGCACTGTGATTGGGCAGAAGATGGCGCTGGGCGGATGGAAATCCTAATGACAGTTTCCAAAATCGCCTCCATTTGTACCATGgGCGCCAATGCCTCTGCTTTGGAAAAAGAGATTGGCCCAGAGCAGTTTCCTGTCAACGAGCACTACTTCGGCCTAGTCAACTTTGGCAATACGTGCTACTGCAACTCAGTCCTGCAGGCGTTGTATTTCTGCCGGCCGTTCCGGGAGAAGGTGCTGGCGTATAAGAGCCAGCCACGGCGCAAGGAGAGCCTGCTGACCTGCCTGGCCGACCTGTTCCACAGCATCGCCACACAGAAGAAAAAGGTGGGCGTCATCCCCCCGAAGAAGTTCATCACCCGGCTGCGCAAGGAGAATGAGCTGTTCGACAACTACATGCAGCAGGATGCCCACGAGTTCCTCAACTACCTGCTGAACACCATCGCCGACCTGCTGCAGGACGAGCGGAAGCAGGAGAAGCAGAACGGCAGGCTGCCCAACGGCACCCTGGACTCCCAGAACAACAACAGCCCACCACAGCCCACCTGGGTGCACGAGATCTTCCAGGGCACGCTGACCAATGAGACACGCTGCCTCACCTGCGAGACTATCAGCAGTAAAGACGAAGACTTCTTAGACCTGTCGGTGGATGTGGAGCAAAACACCTCCATCACTCACTGCCTCAGGGGCTTCAGTAACACAGAGACGCTGTGCAGTGAGTATAAATACTACTGTGAGGAAATGAAGGTGAAGAAGCTGCCCATGATCCTGGCACTACACCTGAAGCGCTTTAAGTACATGGACCAGCTGCACCGCTACACCAAGCTGTCGTACCGTGTTGTGTTCCCGCTGGAGCTGCGGCTCTTCAACACCTCCGGCGATGCCACCAACCCCGAGCGGCTGTACGACCTGGTGGCCGTGGTGGTGCACTGCGGGAGCGGCCCTAACCGAGGTCATTACATTGCCATAGTGAAGAGCCATGACTTCTGGCTGCTGTTTGATGATGACATCGTGGAGAAGATCGACGCTCAGGCCATCGAGGAGTTCTACGGGCTGACCTCCGAGATCTCCAAGAACTCCGAGTCGGGGTACATCCTGTTCTACCAGTCCCGAGACTGAGCGGGGCGCCACCCAGACCATTCTGGCTGCGCGGCTGCATGGGTGCCCTGTGCAGAGCCTGGTGCTGCCGGGCTGGGTGCCGGTGCCCTGGTGGGGTCGCAGCGCAGGGCGCCACACGGGAGACAAACACTCTGCCACACCGGACAGTGGGTTAAATTGctcaggtatcaggtgtcacAGTCACTGACTGACAAAGCTCCTGACTGTGCATTGGAtaaacacacacttatatatacaatcatacacacacacacacacacacgtatacatatagtctctcacacgcacacacaggggTTCCTTTCCTTTCAGACATGATTCTGAAATTCCAGACACCACCTCTTCTCAGTTTTTTCTTAGTTTGTTGAAAGTCTTTCAGAGAAGCTGGTTTGGGTTTTTTTTGGTGCAGGGtttggggtgggtgggggcGTGAGAGAGCTGATagaaggcagagagagggatgggatttttttttttaaattttattattacgactgattttgttgttgggttttgtttgttatggGCGTTTTGCCCTTTGTGAGTCGGGCGCTGTTGTAAAGATCGCTCCGTTGGTATGATTCCTGGAGCCCGGGTGTCCAGAGCCGCACCCAGGAGAAGTGCGGCCTCCTGTAAGGGTCTGCCGTGTGGCTGATTGGCTGCCTGATTAATGTCACTTATAGCTGCTCTTGCTTTGACAATTTTGGACACGGCGGTCTCCAACTGGCTCcactttttattgtgtatttgattgCGTTTTAGTTTTAATCCTgacatctccctctccctctctctgtccgtccGGCTCTCTACGGCACAGAGAGCTCAGGGAGCGGTGTCTAAATGCGTGTGACCGATGAATGAATGTATGGGGCACTGTGACTAGCCAGGGTGGGGGACGCATGGAGAGAGAGCGTGTCTGTGCTGTCCTGAAGACGAGTGGACTTGCACGCGTGCTGCtagtggggggcggggggcgggtAGGGCGACTCCGAT

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17761 lncRNA downstream 61915 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 61915 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 62407 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 166624 24905121 ~ 24906546 (-) True G14311
TU17653 lncRNA downstream 292904 24716726 ~ 24780266 (-) True G14245
TU17860 lncRNA upstream 41597 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 324402 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 332823 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 436496 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 436496 25516989 ~ 25520096 (-) False G14487
AMCG00016565 mRNA downstream 15600 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016562 mRNA downstream 59692 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016564 mRNA downstream 71715 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016556 mRNA downstream 119537 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016555 mRNA downstream 178751 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016570 mRNA upstream 25839 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016569 mRNA upstream 44290 25124783 ~ 25133808 (-) True AMCG00016569
AMCG00016573 mRNA upstream 134574 25215067 ~ 25218658 (-) True AMCG00016573
AMCG00016572 mRNA upstream 139811 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016574 mRNA upstream 143572 25224065 ~ 25234275 (-) True AMCG00016574
TU17768 other downstream 57827 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 61392 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 191072 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 756368 24311037 ~ 24316802 (-) False AMCG00016531
TU17849 other upstream 75 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 193171 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 672502 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 1001010 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 1076028 26156521 ~ 26159442 (-) True AMCG00016616

Expression Profile