RNA id: TU17809


Basic Information

Item Value
RNA id TU17809
length 2306
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00016566
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25150348 ~ 25157461 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAAAGCCGGTCCGGGTGCCTTCCTCCCCGCTGATCGATGAAGAAGATCAGTCGCCCCTGCGCGGTGACGGGGCGCACATGGCCGCGGAGCTGCCTGTTTATCACAGCTCCACCGGAATGTTTTAACCGTCAGTGGCGTTTGAAGTCTAGGTGAATGGCTGAGCTGAAATGTCTTCAGGAACATAATCTAAAACTCCAGCCCTTCGTATGAGTATAGTGTATTTTAggttatttacaaatataaaaaatagacCCACGTTTCtcttttattacagttaatttGATTAACATTGTGGCCGATGCAGTCAGGCACATCGCGGGGGTCCTTGTGGTCCTAGCAGCTCCTGTTTCGGAAGTTGTAGTACGCACGGGTTTTCTCTTCTCTAGGAGTGTGATGTGATGGCGGAGGAAAAGGACCTGGAGAGGAGAGCAGTGGAGGAGCTCCTCAATGAAGCGAAACGAGGAAAGATCCGTGCAGAGACCATGGGCCCGGCCGGCTGGATGAAGTGCCCCCTGCGCGGCGCCAACAAGAGGTTCCTGATGAACACGCTGCGGAACACCGTGTCACCGGGCCACTCACCCCAGCGCCAGGGTGGCACGGCCATGCCTGAGCATTGCACATCCTGGAGACGGCGGGAGgaagaggacgaggaggaggatcGGGGAGCGCGCTTCCGCCCCTCCACTCACAGGCAGGGACGGCATGGCAGCCAACACCGATCCCGCTCCCCCACCAGACACAGGGACTCCCGACACAGCCCTCCCCCACGGCCCTCCCGACGCAGGGCCACGGAGAGCCCCCACACGCCCCCGGCCCGTGAGCACGCTGCCCGCAACTGAGCGGCGGTCATGGACACTCAGGATGGACAGCTGCGTGGATCGCACGGGGCAGAGCTGGGTCCGTGGCGCTGGCGGGCTGCGTGTGTGAACTGCACCAGAGCCCTCCGGATTCTCAGGCCTTCCCCTATACAGCATGCCTGATGCTGTGCGCACACAGTTTTGTTTACAATGCATTTCttaaatttatttatatactttatttttgtatcaattCTCAGTCAGTTCTAAGAGGACTCGGGTGAATGTGCGGCTACGAGAGTCCCAGCAGTGGGGGATGAGCAGGACCTAAGCCTGAGGACTACTGGGAAAAGATTAGGGTGGGGGGATCAGGGGGTCCGTAGGCAGGGATAGAGTACATGCTGGCGTATTGGGTCTACCTGCCCCTACTGTGTGGAGAGGAGACTGCCAGTGTATAGTGTACTGAGAGAAGTGGGGTTGGGTGGATGTATGAGCCACTAGCAGTGCAGTGACCTTATCCAGtagacagatttatttaatctcaAGTCAGTTTCCATCAGAAATGCAATAATGAAACGCAGTAAAAACAGGTACCACAAGATGCTGAAAGTTCCATTTGTTTAACAGATTTATTGTCTTGCCGCGCCCAGTGTCTATATCTCGCGGTCAGCGCCTCGTTCTGAGTGCCGTGCTGGTGTTGGAGCTGCCTGGTTTAGCTGGTGTCCGCCCCCAAGTGCCCAGGTACACTGTGTCTCTGAAATCTGTGTCAAGGATTCTCACTGCTGCTCAAGCATCCTTCAGCCTTCTGTCATTGTCTTCTGTTAGGTTAATGAGAGAAATGTTCTGTTgggaattatatatttatatatattactatacaAATAAACCGTGTTAAGCCACACACATTCTGCTGTGGCAGTTCAGCATCTCTCTGACTGTGAAATGGCTGAaaattaattggttttattccttttctttcttctgttgtTTGAGCAGATAAGTGTTCCAGATTGTTGTGTAACTGCCAGTGCAGTTGTTCACTTGTTCCCCcattaaacattgatttaaaaatagctggaTGACAGTGTTATTTGTCAGTTAGTGGATTATATAACCACTTTGTAATAATAGCTTTTAAACAGCGTCCTGTAACCTTCTTATTCAATAAAGCAAATAggaacacttaaaaaaatataactacaGAGGTGTAGCTTGTGCTTGTTCCCTGTACACGGGCATCAAGAGCCTTTAGTTCAGTTGTGTCTCAAGGCTAAACGCAGTCTCCACAGAGCAGAGCTGCCGGCCCATATCACTGTTGACTGTGGACTGCACACCAGTCCTCGCTGCCCTGCAGTCCAGCCCGGGAACACCAGCGCACATCTGGACTGAATCCTGGATGAATGTCTGGGGATACAGGAGAATCTTGATAGGTCACAGAGTtgagattgttttttattgtggaGTAAAGGGTGTGAAATGTGAGTTGAATTCcgtttctgttaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17808 lncRNA upstream 5701 25144582 ~ 25144782 (+) True G14363
TU17796 lncRNA upstream 28091 25122083 ~ 25122392 (+) True G14354
TU17791 lncRNA upstream 65396 25083773 ~ 25085087 (+) False AMCG00016558
TU17570 lncRNA upstream 730876 24419358 ~ 24419607 (+) True G14177
TU17497 lncRNA upstream 774656 24370326 ~ 24375827 (+) False G14127
TU17836 lncRNA downstream 112377 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 200426 25357887 ~ 25359035 (+) True G14444
TU17914 lncRNA downstream 203010 25360471 ~ 25360808 (+) True G14445
TU17917 lncRNA downstream 206435 25363896 ~ 25366376 (+) True G14448
TU17932 lncRNA downstream 264982 25422443 ~ 25423026 (+) True G14455
AMCG00016568 mRNA upstream 44313 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016560 mRNA upstream 61546 25087611 ~ 25088937 (+) True AMCG00016560
AMCG00016558 mRNA upstream 65386 25080674 ~ 25085097 (+) True AMCG00016558
AMCG00016557 mRNA upstream 100931 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016559 mRNA upstream 119430 25020845 ~ 25031053 (+) True AMCG00016559
AMCG00016567 mRNA downstream 24770 25182231 ~ 25183232 (+) True AMCG00016567
AMCG00016576 mRNA downstream 42681 25200142 ~ 25200540 (+) True AMCG00016576
AMCG00016571 mRNA downstream 84553 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016584 mRNA downstream 227609 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016585 mRNA downstream 249766 25407227 ~ 25408906 (+) True AMCG00016585
TU17806 other upstream 16604 25133198 ~ 25133879 (+) True G14361
TU17758 other upstream 139796 25007962 ~ 25010687 (+) True G14326
TU17581 other upstream 588676 24535018 ~ 24561807 (+) False AMCG00016537
TU17415 other upstream 1040301 24080017 ~ 24110182 (+) False G14057
TU16114 other upstream 8028551 17116793 ~ 17121932 (+) True G13012
TU17920 other downstream 212835 25370296 ~ 25391840 (+) False AMCG00016584
TU18026 other downstream 568387 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 783067 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 783067 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 1128402 26285863 ~ 26289222 (+) False AMCG00016625

Expression Profile