RNA id: AMCG00016567


Basic Information

Item Value
RNA id AMCG00016567
length 456
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00016567
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25182231 ~ 25183232 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGAGGTCATTTCTTGTGGATTCCTTGATCCTGAGGGAGGCGAACGAGAAGGGCAGTGAAAACACCCCACCTCTATTCCCGTACGCCGTGCACCCCTCGCACCCGCTGCACGGGCTGTCCGCCGGCTCCTGCCACTCGCGCAAGTCGGGGCTGCTGTGCGTCTGTCCGCTGTGCGTCACGGCCTCGCAGCTGCACCCGTCTCCCCCCACCATCCCGCTGCTGAAAGCCTCCTTCCCCGCCTTCAGCTCCCAGTACTGCCACTCGGCGCTGGGGCGGCAGCACACGTCCTCCACCGGAGTCAGTCTCAACCACGGCCCGGGCATCTACCAGGCTGCCTACCCCGTGCCGGACCCCCGGCAGTTCCACTGCATCTCCATCGaggaagaggaagaccTGCCCATGTCACCCTCATCCTCGGGGAAAGACGACAGAGACGTCTCGGTGACCCCCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09310 GSH; homeobox protein GSH

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17808 lncRNA upstream 37449 25144582 ~ 25144782 (+) True G14363
TU17796 lncRNA upstream 59839 25122083 ~ 25122392 (+) True G14354
TU17791 lncRNA upstream 97144 25083773 ~ 25085087 (+) False AMCG00016558
TU17570 lncRNA upstream 762624 24419358 ~ 24419607 (+) True G14177
TU17499 lncRNA upstream 807200 24370326 ~ 24375031 (+) False G14127
TU17836 lncRNA downstream 86606 25269838 ~ 25270195 (+) True G14383
TU17913 lncRNA downstream 174655 25357887 ~ 25359035 (+) True G14444
TU17914 lncRNA downstream 177239 25360471 ~ 25360808 (+) True G14445
TU17917 lncRNA downstream 180664 25363896 ~ 25366376 (+) True G14448
TU17932 lncRNA downstream 239211 25422443 ~ 25423026 (+) True G14455
AMCG00016566 mRNA upstream 24784 25150348 ~ 25157447 (+) False AMCG00016566
AMCG00016568 mRNA upstream 76061 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016560 mRNA upstream 93294 25087611 ~ 25088937 (+) True AMCG00016560
AMCG00016558 mRNA upstream 97134 25080674 ~ 25085097 (+) True AMCG00016558
AMCG00016557 mRNA upstream 132679 25034938 ~ 25049552 (+) True AMCG00016557
AMCG00016576 mRNA downstream 16910 25200142 ~ 25200540 (+) True AMCG00016576
AMCG00016571 mRNA downstream 58782 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016584 mRNA downstream 201838 25385070 ~ 25404840 (+) True AMCG00016584
AMCG00016585 mRNA downstream 223995 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016588 mRNA downstream 332247 25515479 ~ 25520165 (+) True AMCG00016588
TU17809 other upstream 24770 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 24770 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 24770 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 48352 25133198 ~ 25133879 (+) True G14361
TU17758 other upstream 171544 25007962 ~ 25010687 (+) True G14326
TU17920 other downstream 187064 25370296 ~ 25391840 (+) False AMCG00016584
TU18026 other downstream 542616 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 757296 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 757296 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 1102631 26285863 ~ 26289222 (+) False AMCG00016625

Expression Profile