RNA id: AMCG00016569


Basic Information

Item Value
RNA id AMCG00016569
length 4480
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00016569
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25124783 ~ 25133808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTTCCAGGACTATGAGGCAGTCGGCCCCAGCAAGAGGTCTGCTCGGCCCGTTGACAAAagcagtgtgagagagagcgatgGAGGGCCGTGGCCGGGGGGGGCAGTGAGGTGCACTCTCTGGCCgcggacgaggaggaggaggaagaggaggaggaagaagaaggagagagaggagggagagggcagCGCTGTGCTGGGGCATGATGGGCACTGCCAACGCGGAAGTGGGGTCGGTGGAGCAGGACCCGGCCCTGAACCCTCTGTGCCTGGACTGCGGGCAGCAGCACTGGAGCCGAGAGAACCACCTGTACAACTACCGTCACGAGGTGGACGACGACCTTGTGTGCCACATCTGTCTGCAGCCGCTGGTGCAGCCCCTGGACACGCCCTGCGGACACACCTTCTGCTTCAAGTGCCTGCGCAACTTCCTGCAGGAGAAGGACTTCTGTCCCCTGGACCGCAAGAAGCTGCACTTCAGACTGTGCAGGAAGTCCAGCATCCTGGTGCACAAGCTGCTAGACAAGCTGCCCGTGTCCTGCCCGCTGGCCGCGCCCTCCTGCCCCGATGCCATGCCCCGCTGCGACCTGGAGGCCCACCTCAAACGCAGGTGTCCAGGGGCTCTGAGCCACCAGGCTGGGCTGGAGCGGCGACGCTCTGGCAAGCAGCAGGCAGGTGAGGGGGGTTGCGAGGCAGGGGGTATGCTGACCGACCCCCCTGAAGGCAAGCAGCTACCGGAGCTGGAGAGTGGGGGAGAGTCGCCACCCGGGTGCAGCTCCCATGGCACTACCGACCCCATGTGGACCGACGAACATGGACTGGACAACCCCGCCTTCGAGGAGAGCACTGAGGAGGACAGTGTACACGGTCTGGACTGCTATCCGACGCGCACCAAGCGGCCCCTCAGCCACCCCTGCCTCCACCTGCAGCGCACCAGCAGCACGGGCTCCGCGGGCTGGGACTGCCCCCACGACAGCCCGCCCCTGTCCGCAGAGGAGGGCTGCCCCAAGCCGCCCAGCCTGCCAGAGGGGGAGATTACCTCCATACACATCCAGCGCTGCAACCCGTACATGGAGCTTGGGGTCAGCATTGTCGGCGGTAACGAGACGCCACTCATCAACGTGGTGATCCAGGAAGTGTACCGTGACGGCATCATCGCCCGCGATGGCCGCCTGCTGGCCGGGGACCAGATACTGCAGGTGAACAACATGGACATCAGCAACGTGCCTCACAACTTTGCCCGCACAACCCTGTGCCAGCCCTGCTCCACGCTGCAGCTCACAGTGCTTCGTGAACGCCGCTTCCCTGGCCGCGCCAGTGCTGCAGGGGGTGTTGGTGGAGGGGCTGGGACAGGGGCGTCGGCGGCGGGGGGCACAGAGGGCAGCGGGTCCCCGCGGGACGACAGCCTGCACGTCACACTGCATAAGCGTGATTCGGCCGAGCAGCTGGGCATCAAGCTGGTGCGGCGTACAGACGAGCCGGGTGTGTTCGTGCTGGACCTGCTGGAGGGCGGGCTGGCAGCGCAGGACGGGAGACTGTGCAGCAACGACCGCCTGCTGGGCATCAATGGCCACGACCTGCGGCACGGCACGCCAGAGCTCGCCGCCCAGATCATACAGGCCAGTGGGGAGCGAGTGCACCTGGTGATCTGCAGACCCAGCAAACAGCTGCCCCCCCTGCCCAGCGCCAGCACGGTCCGAGAGACGGGGTGCCACGCCAGCACCCACCCGcacccccaccacccacccCCCGCACCAGTGGCCACACAGCACCAAAGCCCAGCGACCACACAGCACCACAGCCGGCCTGGCACTCACCGGGACCTGTCTCAGTGCGTGACCTGCCAGGAGAAACAGATCAGCGTGAAGAAGGAGCCCCACGAGTCCCTGGGCATGACAGTGGCGGGTGGCCGGGGCAGCAAGAGCGGGGAGCTGCCCATCTTCGTCACGAGCGTCCAGCCTCACGGATGCCTGTCCAGGGACGGACGGATCAAGCGTGGAGATGTGCTGCTCAGCATCAATGGCCTGGACCTGACCAGCCTGAGCCACAGTGAGGCAGTGGCCACTCTGAAGGCCAGCGCGGCCGGCTGCTCCGTGCTGCTTCGGGCGCTGGAGGTGCAGACCATCGAGGAGCAGGCCCAGGCTGCGGAGGAGACACCCCCCGCCCCTCCGCCACACAGCGACTACGACGCCAGCTGGTCTCCCTCCTGGGTCATGTGGCTCGGCCTGCCCAGCATCGTGGGCGGCTACGAGGAGAGCCACGCCAACCAGCCTTTCTTCATCAAGACCATCGTCCTGGGCACGCCCGCCTACTACGATGGCCGCCTCAAGTGTGGGGACATGATCGTGGCAGTGAACGGGCTCTCCACGTCGGGCATGAGCCACTCAGCACTGGTGCCCATGCTGAAGGAGCAGAGAAACAAGGTGGCGCTGACCGTGGTGTCTTGGCCTGGGAGTCTGGTGTAGTCGTGGCCCCAGGGAGAGGGGGGGCATGTGGGACCGTCGCTGCGCTGCTGCCTGGAGGGGCTGGTGTAGCAGGCTACACTGAAACACGGCCAGGCAGGCTGGCACCACTGTTcagctcttgttttttttcttttctgtttttttgtgactttgtggaaaaagagaaacatttagtttttttgttttcagattttgttttggttttgtttgtttttcgttCTCCACCAAATATTTCTTATGAGGTTTTCTGGACACTCCGGGAGGGGGCATGACAGCGTCCTGTACCGGATCTCAGTACCACGCCATCCCTGGCCTTCCTGAGCCCAGCCTAATGGCCCGCCTGAACCTGGCACTGCAGTGCGGGATCGAGCAGCAGAGGCTGGCAGAGGAGCTGTTCTGTGTTGATTGTCGGCCATTGTTGATTAACTCCTGACACCGGGATTCTCTGACTTGCTGTCTCTGAATGTTATTTTCttgctgttgttcttgttgttgtggTCGTTTTGCTTTCGTTCGCTCTGTTTGGCTTTGCGTTTTCGGGGAGCGCGGAGATGGCCAGGCACCGGTGTCCTGGTTACACCAGGAGCTCTGCCTCCTACACTCCCCCGCAGCTGGGTGGAGTATTCTCTCCAAAGGCTACTAAAGCAAAATGTTCAGTCCTGAGTGCAGAGCTGGTTCTTCCTCGATCGCTTGCTGCGGCTGGGCAAGACCATCCCTGCGCCAGGCCGGCCCTGAGACAAATGTACTGCGTCTCACTGCACTCACTTTGGCGTAACGCTTCCTGGTAAAGAAAAGCTTCATCTGCATCCAGGAGTAGAACTGGATCTATACACATGGGCCAGGAGCAGAGGGCTTCTGTTCCCACCCTGCCAGTCTTCCCCAGAGCAGCTGTGCTGCCGCAGGCCGGTGCTCCGGGCGCTGCTCTCTGGCAGGGGTGTATTCCAGCACTGTCCATGTTGAACGTTGCAGCTGCGTTACTGCTCATACTTGCccagtgacctctgaccccatgCACCCCTGGTGCAGAACAGCGCCTCAAGTTTATTCTTCCGTGCTTTCGGGGGAGACAGCATGAATGGcagagcaggaggaagaccaGTCCGCtagtctgtccctctgtctgtctgtctgtctgcccagTCTCGCTCACAGGGGACGGACCTTGATTCTGGaaagagctgctgctgctgttctgccAACAACTGCCCTTTTTTTgtacaagaagaagaaaaaagagagagatgatagagatgaaagcaaaatgtgtttgttgagTTCAGTCTTGGGTTGTCCTCAGTGCCTACTCAGTGCCATGTTTCATACTGCCCCAGTGTGTCCTAGCTAGTAGTGTCTGTGTCTTCAGGGTAGGCTCGGGGGTCCTGTGATGGAGTGGAGGGGTGGTggaggcagaggaagaggaggcacAATGGTCTGGGAAGCTGCCTCCTAAACTCACCTAATGTAATCTGGGCTTCATTCGGCCCCAGCAGCTCAGTGGCCGGCTGCCCACGCTCCCAGAAGCATTATGTTCCTCGTGCTGTATAACAACAAGCCGCCTCCTAGCTACCCAGCCCCTCCCACATTCCCTGGAGAGCCTACTGTCATTCTCTAAACTCCTAGTTTCATAGGTgttggggtgttttttttaagacgGTGGTGTTAAAGATCAGCATACTGCAGGGATCCATTTTCAGCCAAACCCTGTCTGGATCCTCTCTCGGGCTGTGCCAAGACTGAAGGGGGACTTTATCTTTTGATAGTttcaagtgatttaaaaaatgctgttttgaattCTTCTTTGTCCATCCTGTTTTCTGATCGTCATCCGTAATTAATCATTCTTCCTGTTAGCGGCGTATCAAATCTGGGTGAGGACGGGGTGATGTTTTTCCAGTGTCAATTATGTTCTTGTATTTTTCTGCACTCATGCTGTGTGTCCACCGCATGGCgacctctctctccacacatgagtgagtgtgtacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10692 LNX1_2; ligand of Numb protein X 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 2408 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 113528 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 113528 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 114020 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 218237 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 271087 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 279508 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 383181 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 383181 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 409238 25543046 ~ 25545725 (-) True G14496
AMCG00016570 mRNA downstream 17218 25106332 ~ 25107565 (-) True AMCG00016570
AMCG00016563 mRNA downstream 44290 25073170 ~ 25080493 (-) True AMCG00016563
AMCG00016565 mRNA downstream 67213 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016562 mRNA downstream 111305 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016564 mRNA downstream 123328 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016573 mRNA upstream 81259 25215067 ~ 25218658 (-) True AMCG00016573
AMCG00016572 mRNA upstream 86496 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016574 mRNA upstream 90257 25224065 ~ 25234275 (-) True AMCG00016574
AMCG00016575 mRNA upstream 101184 25234992 ~ 25237511 (-) True AMCG00016575
AMCG00016579 mRNA upstream 130964 25264772 ~ 25276861 (-) True AMCG00016579
TU17849 other downstream 41084 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 109440 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 113005 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 242685 24881148 ~ 24882098 (-) True G14305
TU17553 other downstream 807981 24311037 ~ 24316802 (-) False AMCG00016531
TU17858 other upstream 139856 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 619187 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 947695 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 1022713 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 1047936 26181744 ~ 26184778 (-) False G14676

Expression Profile