RNA id: AMCG00016580


Basic Information

Item Value
RNA id AMCG00016580
length 1884
RNA type mRNA
GC content 0.62
exon number 13
gene id AMCG00016580
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25318898 ~ 25325470 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGACCAGCCGAAATCGGGCGGTGCGCACGGGCGGACAGCGCTCACACACACGGGGGAGGCAACACTGCAGGACCCCGCTGTGCCTAGAACCCCACTCTGGCCGGCAGTTCTGCAGGTGTTGGCCTGGGACCCTCCCACTGCTGAGAAGAGTCTGGGCCTGGGGATGACTGCCGCACCCCCCTCCGACCCACGAGCCACAGCTTCACACCCAGGGCCTGAGCGCAATTTCCCTGCCCTGTGGGTTAGCCTGACTGCCTGTCTCGCTGTGCTGGTGCTTGGAGGCAGTGCTGCCATCACCTGGTACCTCCTGACTGAACTCCCAGCAGAGCAGATGTATTTTGGCGGCTCACTGCGCTTCATCAATGCTGCCTATAGTTTAGCACTGGCTGATAGGTCGTCCAGCAACTTCCAGCTCTTGGCAAGAGCACTTCAGCAGCTAATAGGCAATGCCCTCCTCCAGCCTGAGCAGCAGTGGCACTGTATCTGTGTGAATGTGACAGCCTTCAGtgAGGGCAGTGTCATTGCCcatttcctcctctctctggaGGTCAACAGCCGAGTGGACCAGACCTTACATGGGTCGGATTTTGCACAGCAACTGACCAATCACATCAAGTCAAGTCATGAGGAGTATTTGCTGTCCTCACTAAAAGGTGAGCATCTGGAAGTGTCCCAGGGTTTAGACTGTCCGGTATCTGGGCTGGAACTCCACTGGAGGGGTGCGGCTCCGTGCCGGTGGGAGCTCAGGGCAGGGCGGGGCCAGCGCGTCAGACTGACCCTCCACAGCCAGAGCTCAGGGGGAGACTGTGAGCAGGACTTCATCGCTGTGTATGACTCTTTAGCCGCAGGGAAAGCACGGCTCATCACCAGGCTGTGCCCCGGGTCTGAGCACCGCCCTCTGCAGGCGCGAAGTGTGCTCTCCTCCAGCCGTGTCATGCTGGTGATCCTCCATTCACAGCAGCAGCCCTCCGCTGGGCTGTGGGCATCCGCACACTTCCTGCAGGGCAACAGGGAGACCTGCGCATTTCCTGCCTTCCAGTGTCATAACACAACATGCATCGAGAAGCCCAGCGAAGAGTGTGACAGCACTGTGGACTGTCCAGACACCCCTGAGGAGATGGCCTGCGGCTGCGGGCGGCGGGGGGAGCAGGAGAGCCGTGTGGTAGGGGGACAGGATGCCCAGCACGGGGAGTGGCCCTGGCAGGCCAGTCTACACTTCCTGCAAAAACATGTTTGCGGGGCGACAATCATTGGGCCGCGATGGCTGCTGTCTGCTGCACACTGCTTCCAGGACCCCACACAGCGCAGGGTATCCAGTGCATGGCTGTGGACAGCGGTGGTGGGCACAGTCAGCAGACAGGCCGGTGGCCCAGGCTCCGTCTTGCATGTGGTCCGGCGCATTATAACCCATGAGCAGTACAACATGGAGACGCTGGACTCTGACCTGGCCCTGCTGGAGTTGGAGAGGCCGCTGGAGTTCAGCAGCAGTGTGCAGCCCGTGTGTCTGCCTCCCCGCTCACACAGCATCCCTGCAGGCCAGCCCTGCTTCGTCACTGGCTGGGGTCTGCTGCAGGAAGATGGTGTGCTGCCCCTAGTGCTGCAGAAGGGGCAGGTGCAAGTGATCGCGCAGGCTGAGTGCTCCAGGTACCTGGGCGGCTCCGTGACGGTGAATATGCTCTGTGCAGGACAGCTGCAGGGGGGCGTGGATGCCTGCCAGGGTGACTCTGGGGGACCCCTGGTGTGCCAGGCGAGGTCAGGGCGCTGGGTCCAGGCCGGCGTGGTGAGCTGGGGGGAGGGCTGCGCTCGCAGGCAGCGGCCCGGCGTCTACACCCGCCTCTCGCAGTTCCAGGACTGGATCAGCCAGCAGGTCGGCGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 196523 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 307643 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 307643 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 308135 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 412352 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 79425 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 87846 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 191519 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 191519 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 217576 25543046 ~ 25545725 (-) True G14496
AMCG00016578 mRNA downstream 7760 25285129 ~ 25311138 (-) True AMCG00016578
AMCG00016581 mRNA downstream 34471 25282234 ~ 25284427 (-) True AMCG00016581
AMCG00016583 mRNA downstream 36672 25279655 ~ 25282226 (-) True AMCG00016583
AMCG00016579 mRNA downstream 42037 25264772 ~ 25276861 (-) True AMCG00016579
AMCG00016575 mRNA downstream 81387 25234992 ~ 25237511 (-) True AMCG00016575
AMCG00016577 mRNA upstream 1398 25326868 ~ 25347437 (-) True AMCG00016577
AMCG00016582 mRNA upstream 21975 25347445 ~ 25349142 (-) True AMCG00016582
AMCG00016593 mRNA upstream 27871 25353341 ~ 25357447 (-) True AMCG00016593
AMCG00016589 mRNA upstream 32417 25357887 ~ 25360682 (-) True AMCG00016589
AMCG00016592 mRNA upstream 37928 25363398 ~ 25367579 (-) True AMCG00016592
TU17858 other downstream 41420 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 235199 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 303555 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 307120 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 436800 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 427525 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 756033 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 831051 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 856274 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 856274 26181744 ~ 26184778 (-) True G14676

Expression Profile