RNA id: AMCG00016581


Basic Information

Item Value
RNA id AMCG00016581
length 369
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00016581
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25282234 ~ 25284427 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCGGGTCTCCGGGGGGTGCGGGGCAGCCGGGCTGTTCCCATGTGTGAGTGAGAGGCTGCAGAGTCTGGCAGCGGGGGGAAGGGTGGGGGACAGTGCAGTCAGCATAACTCTCctcacacacagggacagaggaATCCAGGAGAGCCCCCTTGAGGCCCCGCAACTCCTACGCAACCTGAGCAACCAGAGTGTGAATGTCAGCAGCTCCGTCACGCTGGCATGCCTGGCACAGGGGGTGCCTGAGCCACAGCTGGCATGGTACAAGGACAACCACAAGCTGACACAGGGATCTGAGTATCTCCCTTGCTATCCCATGATGGTCCTACTCAGTGAGGGCAGGGTGGCGTCCACGTGTCCACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 159859 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 270979 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 270979 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 271471 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 375688 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 120468 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 128889 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 232562 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 232562 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 258619 25543046 ~ 25545725 (-) True G14496
AMCG00016583 mRNA downstream 8 25279655 ~ 25282226 (-) True AMCG00016583
AMCG00016579 mRNA downstream 5373 25264772 ~ 25276861 (-) True AMCG00016579
AMCG00016575 mRNA downstream 44723 25234992 ~ 25237511 (-) True AMCG00016575
AMCG00016574 mRNA downstream 47959 25224065 ~ 25234275 (-) True AMCG00016574
AMCG00016572 mRNA downstream 60666 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016578 mRNA upstream 702 25285129 ~ 25311138 (-) True AMCG00016578
AMCG00016580 mRNA upstream 34471 25318898 ~ 25325470 (-) True AMCG00016580
AMCG00016577 mRNA upstream 42441 25326868 ~ 25347437 (-) True AMCG00016577
AMCG00016582 mRNA upstream 63018 25347445 ~ 25349142 (-) True AMCG00016582
AMCG00016593 mRNA upstream 68914 25353341 ~ 25357447 (-) True AMCG00016593
TU17858 other downstream 4756 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 198535 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 266891 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 270456 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 400136 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 468568 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 797076 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 872094 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 897317 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 897317 26181744 ~ 26184778 (-) True G14676

Expression Profile