RNA id: AMCG00016582


Basic Information

Item Value
RNA id AMCG00016582
length 630
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00016582
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25347445 ~ 25349142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatgccCTCACGCAGAGTGCCTTGAGCAAGAGCCTGGATACCGACCTGACCTCTGATGACAGTAATGCTCTCTTCCAGGGCACTATAGGGTTACAGGTACCTCCTGCTTTAGAAACCGATACTCCACTGACAACAGCTCAGAAAACACCCCGGCAAACGTCGTGCTCGGCCGGTGCGATGGGATTATGTCTGGCTTGTGTACGGCTCCTCTTCCCCCCGCCTAAAGCGACCTACCGATACCCTGCAGCGAGGCAGCGGCGCCCCAGGATGGGCACGGAAACCGAGGGGCACAGCCCGAGCCCCGCTGGGGACAATGCCAGTGTCAGTATCAGCACCATCGGGGACAATGTGACCGACGTGTCTGTGGAAGTGGCGACCGTGGATGCCAAGCTGTCAAAGGCCAGAGCACGGCGGAAGCACAGAAATGGGAAGAGGAAAGGGAAGAGGAGGCGCCGGTCGAAGAAGCGGAAGACCGTGTGGAACCTGCAGGCACTGGCCATCCTGCTGACCGTCACCGTGTTTGTGGTCGTGGTGATCATGTGGACCCTGCTATGGCTGTTCATCTGTGAGCGAGGGAgcaagggaggagggagggagagggagagcaggggaCAGGGAGCATGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 225070 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 336190 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 336190 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 336682 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 440899 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 55753 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 64174 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 167847 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 167847 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 193904 25543046 ~ 25545725 (-) True G14496
AMCG00016577 mRNA downstream 8 25326868 ~ 25347437 (-) True AMCG00016577
AMCG00016580 mRNA downstream 21975 25318898 ~ 25325470 (-) True AMCG00016580
AMCG00016578 mRNA downstream 36307 25285129 ~ 25311138 (-) True AMCG00016578
AMCG00016581 mRNA downstream 63018 25282234 ~ 25284427 (-) True AMCG00016581
AMCG00016583 mRNA downstream 65219 25279655 ~ 25282226 (-) True AMCG00016583
AMCG00016593 mRNA upstream 4199 25353341 ~ 25357447 (-) True AMCG00016593
AMCG00016589 mRNA upstream 8745 25357887 ~ 25360682 (-) True AMCG00016589
AMCG00016592 mRNA upstream 14256 25363398 ~ 25367579 (-) True AMCG00016592
AMCG00016591 mRNA upstream 64432 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016590 mRNA upstream 72141 25421283 ~ 25423659 (-) True AMCG00016590
TU17858 other downstream 69967 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 263746 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 332102 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 335667 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 465347 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 403853 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 732361 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 807379 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 832602 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 832602 26181744 ~ 26184778 (-) True G14676

Expression Profile