RNA id: AMCG00016583


Basic Information

Item Value
RNA id AMCG00016583
length 480
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00016583
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25279655 ~ 25282226 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGGTGTTTTGTGCACAGGTATCCTCCTGTCCACCGGAGGGAGCACCCTGCACATCGAGCGCATCACAAAAGAAGACGAGGGCTTGTACACCTGCGAGGCAACCAATGAGAGAGGCTCTGTGGAGAGCTCAGCCTACCTCACAGTGGAAGCTGCTTACCACAGTGGAGTTCTTGCTCTAGCTGGAAGTGCAGACTCGGCAGACAAATCCAACCTGGAGATCCCCACGCTCACCTGCACCTGTGTGGTGGCGACCCTGTTCTGGCTGCTCCTGACCCTGTTTATACGCAAGCTGAAAAGGGTAAGATGCCAATGGGGAGAGGAAGCAAAACCCTCCGTGGGGAGTTTCCATGTGGGAAGTATCGAATGCCACGAAAAATTACATACCTCTAAACATGAGCACCTCTTCCAATACGTGGCAGAACCGGACCCTGTGGCAGAGCTGCCTGTGCCCTCCTGCAGCACAGTGGGCATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 157280 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 268400 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 268400 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 268892 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 373109 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 122669 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 131090 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 234763 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 234763 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 260820 25543046 ~ 25545725 (-) True G14496
AMCG00016579 mRNA downstream 2794 25264772 ~ 25276861 (-) True AMCG00016579
AMCG00016575 mRNA downstream 42144 25234992 ~ 25237511 (-) True AMCG00016575
AMCG00016574 mRNA downstream 45380 25224065 ~ 25234275 (-) True AMCG00016574
AMCG00016572 mRNA downstream 58087 25220304 ~ 25221568 (-) True AMCG00016572
AMCG00016573 mRNA downstream 60997 25215067 ~ 25218658 (-) True AMCG00016573
AMCG00016581 mRNA upstream 8 25282234 ~ 25284427 (-) True AMCG00016581
AMCG00016578 mRNA upstream 2903 25285129 ~ 25311138 (-) True AMCG00016578
AMCG00016580 mRNA upstream 36672 25318898 ~ 25325470 (-) True AMCG00016580
AMCG00016577 mRNA upstream 44642 25326868 ~ 25347437 (-) True AMCG00016577
AMCG00016582 mRNA upstream 65219 25347445 ~ 25349142 (-) True AMCG00016582
TU17858 other downstream 2177 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 195956 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 264312 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 267877 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 397557 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 470769 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 799277 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 874295 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 899518 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 899518 26181744 ~ 26184778 (-) True G14676

Expression Profile