RNA id: AMCG00016584


Basic Information

Item Value
RNA id AMCG00016584
length 5346
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00016584
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25370296 ~ 25404840 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGAGGACAAAGTTCTTGCCTCGGCTGTCGTCAGTTTGACACAGTAGgctgctgtattattatttttgggcCCCCATTGCCATATTTGGATCATCCCAGGTTTCGGTAGTGCAATCCACTGAAGAAATGACCCCTTGCAGCACATGTGGGGCCCAAGGAAAAGGGGGTGTCCTGCAGGAGGGGTCAGAGCCAGGGTCCCCAGACGAGGACATAATTTCCAGTTTTTCCAGCAACAGAAACTGCCTTCATTCCCACAGGGTGGTGGGCAGCACTGAGCAGGTTTCCAACAGCCAGCCCAATGGCACACCTATCATGAAAGAGGAAAACATCAAAACCACAAGGCTGAATGACTGGAACACACAGAAACGTTTGGGCGCCAGCGTTCACAGTGATGTGCTGGAGACGGAGAATGACAGGCTGAGCCCGTCCAAGATCATGCGCTTCTTCTCCACACCACGCAAACGATCCAGCTCCAGTTCTGAGAGACCTCAGCCTCCCGCCGTCATGGGCAGCTCCCCCTCCTGGAACGCACTTTCCTCCCTGAAGAAAATGGGCTCCTTCAAGAAGCTCAGATCCACGGTCTTTCAAGGCATCCAGGGCAGGGAGGGCTCAGAAATGGCACTCAAGGAAATGGCTGTGAATGAAGAGGGCAAACATGTCCCCAATGGGGTTGGTGTTACAGTGGAGAGTGTAGAGGACTGCAGGGGCATGGGACAGGGCCTGACCACAGAGGGTTCAGACGCAGAGGATGGAGACGACTCTTTCCTAAGGAATACGCATCGTTCTCGCAGCATCCGCAGGGCCTATGGGGCTGGCCGCATCCCCCTATTGGACACAAGGAGGGGGGACACCCAGCAAAAGAACCTGCAGACCCTTTCTCCCATCGCTCAGGAACCTTGCGGCAGTGAGCCACCTGAGAAGCCAGAGGAGAGTGTCAAGGTGGTTTACAGACGGAGCAAAAGCACTGACAACTTCAACCTCCTCAAGAAAAGCTCTTTCAAACGGAAATCCACATCTAACCTGCCTGAGCTCAAAGCTGCAAATGACAATCAAAAATCTCAAAGGACATTCAGTACCTCTTCTGTGGACCTATTGGATAAGCACCCTGGTAACACAGAGAGGATGTCCAGACGCTGGAGAAGCCCAGTCAGAGCTAAAGACTTCGACCGTGTGCTGAAGCTGGTGAGCAACGTGGCAGATCCAGCAGCTCGGCAGAAGGACAGTTCTTCAAAGAGCTCGGCCTCCGAGAAGAGCAGAAACACCCGGCCTCAAAGCCGTCTGCATGATGACTACTCTCGCCGTGCCTCCTGCTCCTCTGAGCGCGAGCGCCGCCGCTGCCTTTCTCCCAGCCGCAGTTTGGTGACCGTGGCCTCTGGACCAGCTGCCCCCGGGCATCCAGCCTCAGAACCTGCCCCTGCCCACGGACTGCCTGCTTTTCCCAGCAGCCACCCCTCTTGTCACAGCCCAGACTCCCTGTGCCCCCCCAGCCCTCTGACCAGCCCGTCCAGCCCTCTGAGCCCCAGCAGCACTAACAATGAGGTCTTCTATCCTGACGACAGCTGTGAATCAAAGAGCTCCCCTCTGTTTTTCTGCAATGCCCAGCAGCCCATCTCTGAACAGGGACCCAGTCCTGCTCAACCACAAGGCCCCAGCATGGAGAATGCAAAGATCGATACTACCCTACACTGTACCAACCGACACAGCACATTGTCTCTGAGCTCCATGGACAGCGATGGGCGGGCAGAGGGACCGGCTCACAAACCAGGGAAGAGCCCTGTGTGCTTCCAGGACTCAGTCCACACAGTTTACTATGACGATGCAGCTGAGGACAGTGGGATTAGTAGCCAGTCTCAGCTGAGCCTGAACACGGCTTCTGGAGGAGAAGACCGGAAAGAGGAGGGTGCTGCTGAGGAGAAGTGGAGGAGCTCTCAGTCTGCAGAGGACGAGAAGGTTGACGTTCAATCAGTGATCGAGAGAGCGCGGTACTGGGGGAGGGACAGGCCCCGCCCTCGGCCCGTGTCCGATTACAGCCAGCTGATTGAGCGCTCGTGCTCCATCCCTGAAGATGATGTTCCTTTGCCGAGCGAATCAGAGCCGGAGAGCCGGCCCACCATGGCCCAGATCGCCTGGAGCAGGAAGCGTAGGCCCATCTCGGTCATTGGGGGGGTTGAGCTGTTCCCCCCCACCAGTGATGGGACCATGGACTTCCACCATGAACAACCCCAGCGCCCCCCCATCCCATCACACCAAGTGCCCCCATACCGCGGTGTGTCGGCCCGCTTCCGGCCCTGCGTCCTGTCCCAGAGCACCCCCATTGGCCTGGACCGGCTGGGCCGACGGAGACAGATGCGACTGTCCAGCAATGGAGCTGTCAATACTGGAGCCCTTGTGGACGACAATGGCAGCGAAGAGGACTACAGCTTCGACGAGATGGCCGAGGGGAGTCCTCGATACCTGCAGCCTGGGGGAGAGCAGCTCGCTGTTAACGAACTCATCGCGGATGGCACTGTTGTCTATGCAGAGGCACTGTGGGATCATGTTTCCATGGGCGAGCAGGAGCTGGCTTTCAAAGCAGGAGATGTCATTCATGTCCTTGATGCAAATAACAAAGAGTGGTGGTGGGGCAGGATTGAGGACAAACAAGCGTGGTTCCCTTCAAGCTTTGTCAGGCTGCGGGTGAACCAGGAGGACTGCGTGGCCGAGAGCGCAGAGAGCACACTGGATGACACGGACCCCTCCTGCAAAGAGCCGCGGCACAAGAGCTCGGAACACAAAGACCAGATGAGGACCAACGTCATCAAGGAGATCATGAACACAGAGCGGGTCTACATCAAGCACCTGAAGGACATCTGTGAGGGCTATATCAGGCAGTGTCGGAAGCACACAGGCATGTTTAATGATATTCAGCTGAGGACAATATTTGGCAATATTGAAGATATCTACAGATTCCAAAGGAAGTTCTTAAAGGACTTGGAGAAGCAGTACAACAAGGAGGAGCCTCATCGGAGTGAAATCGGCTCCTGCTTCCTTCTGCACCAAGAAGGCTTCTCAATCTATTCGGAGTACTGTAACAATCACCCCAGTGCCTGCACGGAGCTCTCCCACCTGATGAAGCACAGCAAATACCGGCACTTCTTCGAGGCTTGCCGTCTGTTGCAGCAGATGATTGACATTGCCATCGACGGCTTCCTGCTCACCCCGGTGCAGAAGATATGCAAGTACCCCCTCCAGCTGGCAGAGCTGCTGAAGTACACCACGGTGGAGCACAGTGACTATCAGAATATAACCGCTGCGTATGAAGCAATGAAGAACGTCGCTTGCCTTATCaatgagaggaagaggaggctgGAGAGCATTGACAAGATTGCGCACTGGCAGGTCTGCATTTTGACCTGGGAGGGGGAGGATGTTTTGTGTCGGAGCTCCGAGCTCATCCATTCCGGAGAGCTGACGAAAATCACCCGGCAAGGCAAGACTCGGCAGAGGGCCTTCTTCTTGTTCGACCACCAGCTCATATTCTGTAAGAAGGATCTTCTGCGGAGAGACATGCTGTACTACAAAGGCCGCATAGACATGGACCACACAGAGCTGATTGACACGGAAGACGGCAAGGACAGGGACTTTAACATCACCGTGAAAAATGCGTTCAAGCTCCGAGACAAACCCTCTGATGAAGTTTATATGTTCTCTGCGAAGAAGCTGGAAGACAAGCAGAGATGGCTGCTAGCCTTTGCAAACGAGAGGAAAAGGGTGCAGGAAGACGAGGAGATGGgAATGGAAATCagtgaaaaccagaagaaacaAGCAATGctaaatgcaaaaaaatcaaGACAAGGAAAGTTGAAGAGTTTGAGCTACAGTGGATGCCCTGTGCCCCCACCACACCAGGCCCTGCACCCAATGCATCAGCGCCACGTGACGGTGCCCACCAGTGTCCCCCAGCAGCAGGTCTTCTCCCTGGCCGAGCCCAAGAGGAAGCCGTCCCCGTTCTGGCACAGCTTCTCCCGTCTGGCCCCGTTCAAGAAGTGAGGGAATGTGTGGAGTAAGAGCCATTTCATCTGGCGGCAAGGAGTGGAGGACACTTGTAGATATTTCAGTTCTGCTTTTTTTGAGCATATTCCTACCTTATACTTCACAGGAATACTGACAAATGTGTACTctatatggaaatatatatgtattgagCAAAGTTTAGAAATACTTGCATTTTCTATAAGGCTGGATccttttgtaatatttgatgtCCAATTTCTGAGTGTCCATGAGTTTTAATGGTGTGTGCAATATTTCTGAAGTATATCTTGCTTTTAGGGACATTATATTAGAGAAGAGAAATTTTAGTGCTGGTATTAAAGTGAAAGAAGatatatctttcttttttacctaaaactgcaatttctttttctgtgaatctctcacacacactaattTTGACGACCACATAGAAggtgggaagattaaatcatatatttatatgtgtgtgtgtgtatgtatataatgcGTGTGATAAACGGACATATGAAGAAATGATTCTCATGGAGAGAGCCTTTAACTGTCCTTTCAGTGGACTGGCCTGAGTTTGAGCACAATGATTTCCCTGAGCGGGTGGACGTGCTTGCTGAACTTATGGGATGATTCAAAACGTCTCTGTGgacttcaataaaaataaaagcttttgcTTTAATAGTTGAATACATATAATCTTTTAAAAGACACGACATCCAATAGCTGTGTATTGTTGCAGCACTGACAGGcacctgttgttttgttttttttatcatttgttgTGTCTGAAAGctgtgacatttttaattattattatttttttaagttacattttctGGAATGAAGTGGAGACAAGTGGCTTAAACTTTGTTGATGTATTACCTCCACAACTACTGAAAGATTAACAGTGCCATTCCAAAGATCTgctaaaatgttacttttattttgcttaaacATTTACCATTTTGCCTCTTGAAGCTTGAATTATGTGAAGGATTACAAGTTACAAGCTGATGCCTGCTTTATACATCTGTACGGTCCATGCTTTTCTATTAATTTCCACTATACTTCAAATGCTGTCATTCTGCAGTATGAACATATACcacaaagtataaatataggccctgtataaaaaacaccaaactcatattaaaatgatgtgaCCCACAAAATGTGAGAAGTATgcttcttttcatttggtctgctcttatgaaaatcaaatatattttcaaatgtaaaatttgCACGTTTACACTATGATACAATATgtattacactttaaaaatgtatttctccaaGTACAAATTATAAGCAATATTGTGTATTTCATAGAAACAaa

Function

GO: NA

KEGG:

id description
K05769 ARHGEF4_29, ASEF1_2; Rho guanine nucleotide exchange factor 4/29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17917 lncRNA upstream 18694 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 24262 25360471 ~ 25360808 (+) True G14445
TU17913 lncRNA upstream 26035 25357887 ~ 25359035 (+) True G14444
TU17836 lncRNA upstream 114875 25269838 ~ 25270195 (+) True G14383
TU17808 lncRNA upstream 240288 25144582 ~ 25144782 (+) True G14363
TU17932 lncRNA downstream 17603 25422443 ~ 25423026 (+) True G14455
TU18004 lncRNA downstream 199799 25604639 ~ 25611689 (+) True G14502
TU18012 lncRNA downstream 267419 25672259 ~ 25678349 (+) True G14510
TU18082 lncRNA downstream 529111 25933951 ~ 25935581 (+) True G14556
TU18169 lncRNA downstream 760790 26165630 ~ 26165982 (+) True G14623
AMCG00016571 mRNA upstream 122614 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016576 mRNA upstream 184530 25200142 ~ 25200540 (+) True AMCG00016576
AMCG00016567 mRNA upstream 201838 25182231 ~ 25183232 (+) True AMCG00016567
AMCG00016566 mRNA upstream 227623 25150348 ~ 25157447 (+) False AMCG00016566
AMCG00016568 mRNA upstream 278900 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016585 mRNA downstream 2387 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016588 mRNA downstream 110639 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016587 mRNA downstream 129209 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016586 mRNA downstream 148640 25553480 ~ 25559207 (+) True AMCG00016586
AMCG00016598 mRNA downstream 320413 25725253 ~ 25758926 (+) True AMCG00016598
TU17809 other upstream 227609 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 227609 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 227609 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 251191 25133198 ~ 25133879 (+) True G14361
TU17758 other upstream 374383 25007962 ~ 25010687 (+) True G14326
TU18026 other downstream 321008 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 535688 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 535688 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 881023 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 1022499 26427339 ~ 26432356 (+) True AMCG00016633

Expression Profile