RNA id: TU17920


Basic Information

Item Value
RNA id TU17920
length 1646
RNA type TUCP
GC content 0.52
exon number 3
gene id AMCG00016584
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25370296 ~ 25404840 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAAGTGCGCCTGGTTTCGGGTTGAAGGATGATGCAGATACTACTTTAAACAGTGACTTACATACACACCACTGGGTGTGCGGACTTCAACAATACCGGCTGGCTTGTATTGCCGTGCCAggttgtatatgtgtgtgttatttccAGTggacagtgtgttgtgtgcagaAGTGCGGTGGAGTCAGTGGGGAGATAAGTTCACTCACTTTACCCTCCAGCTCCGGCGCAGATCCGACTGTGAAAATGCGATATTGTCCGTCTCTTTCCATAACAAGGACACACGTATCTGTTTGGATATATGAATGAGAGGGCGTGGAAGCCTTTCTAAATTTGCCTCTGTTGCTTAGCCGTGGATTTTAAAGAAGCTACCTACtgaaaagaacaagaaagaacATTAATCTCCCCAAACAAGCACTCCACAATGATGGCAAAGAGAACCTGCTTGAGATCTATCAGCACTCCAAACCTTGTAGTGCAATCCACTGAAGAAATGACCCCTTGCAGCACATGTGGGGCCCAAGGAAAAGGGGGTGTCCTGCAGGAGGGGTCAGAGCCAGGGTCCCCAGACGAGGACATAATTTCCAGTTTTTCCAGCAACAGAAACTGCCTTCATTCCCACAGGGTGGTGGGCAGCACTGAGCAGGTTTCCAACAGCCAGCCCAATGGCACACCTATCATGAAAGAGGAAAACATCAAAACCACAAGGCTGAATGACTGGAACACACAGAAACGTTTGGGCGCCAGCGTTCACAGTGATGTGCTGGAGACGGAGAATGACAGGCTGAGCCCGTCCAAGATCATGCGCTTCTTCTCCACACCACGCAAACGATCCAGCTCCAGTTCTGAGAGACCTCAGCCTCCCGCCGTCATGGGCAGCTCCCCCTCCTGGAACGCACTTTCCTCCCTGAAGAAAATGGGCTCCTTCAAGAAGCTCAGATCCACGGTCTTTCAAGGCATCCAGGGCAGGGAGGGCTCAGAAATGGCACTCAAGGAAATGGCTGTGAATGAAGAGGGCAAACATGTCCCCAATGGGGTTGGTGTTACAGTGGAGAGTGTAGAGGACTGCAGGGGCATGGGACAGGGCCTGACCACAGAGGGTTCAGACGCAGAGGATGGAGACGACTCTTTCCTAAGGAATACGCATCGTTCTCGCAGCATCCGCAGGGCCTATGGGGCTGGCCGCATCCCCCTATTGGACACAAGGAGGGGGGACACCCAGCAAAAGAACCTGCAGACCCTTTCTCCCATCGCTCAGGAACCTTGCGGCAGTGAGCCACCTGAGAAGCCAGAGGAGAGTGTCAAGGTGGTTTACAGACGGAGCAAAAGCACTGACAACTTCAACCTCCTCAAGAAAAGCTCTTTCAAACGGAAATCCACATCTAACCTGCCTGAGCTCAAAGCTGCAAATGACAATCAAAAATCTCAAAGGACATTCAGTACCTCTTCTGTGGACCTATTGGATAAGCACCCTGGTAACACAGAGAGGATGTCCAGACGCTGGAGAAGCCCAGTCAGAGCTAAAGACTTCGACCGTGTGCTGAAGCTGGTGAGCAACGTGGCAGATCCAGCAGCTCGGCAGAAGGACAGTTCTTCAAAGAGCTCGGCCTCCGAGAAGAGCAGAAACACCCGGCCTCAAAGCCGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17917 lncRNA upstream 3920 25363896 ~ 25366376 (+) True G14448
TU17914 lncRNA upstream 9488 25360471 ~ 25360808 (+) True G14445
TU17913 lncRNA upstream 11261 25357887 ~ 25359035 (+) True G14444
TU17836 lncRNA upstream 100101 25269838 ~ 25270195 (+) True G14383
TU17808 lncRNA upstream 225514 25144582 ~ 25144782 (+) True G14363
TU17932 lncRNA downstream 30603 25422443 ~ 25423026 (+) True G14455
TU18004 lncRNA downstream 212799 25604639 ~ 25611689 (+) True G14502
TU18012 lncRNA downstream 280419 25672259 ~ 25678349 (+) True G14510
TU18082 lncRNA downstream 542111 25933951 ~ 25935581 (+) True G14556
TU18169 lncRNA downstream 773790 26165630 ~ 26165982 (+) True G14623
AMCG00016571 mRNA upstream 107840 25242014 ~ 25262456 (+) True AMCG00016571
AMCG00016576 mRNA upstream 169756 25200142 ~ 25200540 (+) True AMCG00016576
AMCG00016567 mRNA upstream 187064 25182231 ~ 25183232 (+) True AMCG00016567
AMCG00016566 mRNA upstream 212849 25150348 ~ 25157447 (+) False AMCG00016566
AMCG00016568 mRNA upstream 264126 25103687 ~ 25106170 (+) True AMCG00016568
AMCG00016585 mRNA downstream 15387 25407227 ~ 25408906 (+) True AMCG00016585
AMCG00016588 mRNA downstream 123639 25515479 ~ 25520165 (+) True AMCG00016588
AMCG00016587 mRNA downstream 142209 25534049 ~ 25542045 (+) True AMCG00016587
AMCG00016586 mRNA downstream 161640 25553480 ~ 25559207 (+) True AMCG00016586
AMCG00016598 mRNA downstream 333413 25725253 ~ 25758926 (+) True AMCG00016598
TU17809 other upstream 212835 25150483 ~ 25157461 (+) False AMCG00016566
TU17810 other upstream 212835 25150483 ~ 25157461 (+) False AMCG00016566
TU17811 other upstream 212835 25150483 ~ 25157461 (+) True AMCG00016566
TU17806 other upstream 236417 25133198 ~ 25133879 (+) True G14361
TU17758 other upstream 359609 25007962 ~ 25010687 (+) True G14326
TU18026 other downstream 334008 25725848 ~ 25740558 (+) False AMCG00016598
TU18062 other downstream 548688 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other downstream 548688 25940528 ~ 25950176 (+) False AMCG00016607
TU18257 other downstream 894023 26285863 ~ 26289222 (+) False AMCG00016625
TU18348 other downstream 1035499 26427339 ~ 26432356 (+) True AMCG00016633

Expression Profile