RNA id: AMCG00016589


Basic Information

Item Value
RNA id AMCG00016589
length 1269
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00016589
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25357887 ~ 25360682 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAAAGCCAGGACACAGGTACAGAAACTGCTGGGCTCACAGCATACCTGTGCGTAAGAACAGTAAGACTGAACCTCTTAATAACCTCATATATTCTGAAAAAGTGTGAAGACTGAGGAGGATTGCCTTGACTCTGGAAGGACCATGTGTGCGAAGCCGTGCCAGGTGGTGCTTTTGGCGGGGCTCCTGTGTGGAGTGTCCAGTGCTCCATTTATGAAGGAGGAGGATGCTAATCAGTTCATCCGACTGAAGAGACAGGCGCAGTATTCACAAGATGGCTACTGGGACCCGTACCATGCACACAACCAGTGGGGATACACTGTCCAAGAGCAGGCTACTGAATACTGGACATCACTCCGGACCAACGCACAGTACTATATGGACATGGGTTACATGATGTTTGATCCATCTGTTGCCATagaGAATAACAAGGTGTATATGGACATGCTGCGCAGCACAGGGGAGCACCTTCACGACCAGGCAGGCCAGCACTGAGCCCCCAGGACAGCAGGATCGTGGTAGATGCCCCGCAGCCAGGGTGGCATAGAGCAGCCAGGTCACCCAGTCAAATACAGTGCAGGCTGCTTCAACAAACTGCCCTGCCTGGGTCCAGATCAGCCATAGATTATTGGTGCTATTCTTGGTAGGACATCAAGGGCTTTCTTATATTATGCAATATAATATGTAGTGAAGTGTATTCATACCATCCATTCCATACAAAGTCGTGATTAAAACACGGGGTGTGTAAACCTTTGACTGCAGCTGCATTCATTTCTGTGGAGCAACagtcaaacatttaaacaccGGTGTGTGGAATATATATAGTTCTCTCTTGGCTGGATTGTTGTTCATCacaatctgaaaatatttaattgaccAAAAAGTGTCATTTAATGTACAGCTTTGTATTCACATGAATGGATCACAgaataatattgtttcaaatgaagaatgcaaaatacagttaatataatgtCATGttcttcaatattttttatactCTAGGCTTGTCAATATAGAAACAATAAATTGCATTTCTGCAGTGTCAgtctctgtcagtctgtcaggcTCTCCATTAGTTCTGATTATggtaatatatgtttatatttttatttcacgtTTGTGGTGCTTTTTAACCTCAGTGTCACCCCCCTGCCGCTGCTGTCCTGACAGTGACACTTCTGGACACATCGGACTCTCCACTTCATGTGGTGTGTTTTCTACATAGTGTTAAGTGTGTACCGTACTGTTGATCATGCATGAATaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 235512 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 346632 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 346632 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 347124 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 451341 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 44213 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 52634 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 156307 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 156307 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 182364 25543046 ~ 25545725 (-) True G14496
AMCG00016593 mRNA downstream 440 25353341 ~ 25357447 (-) True AMCG00016593
AMCG00016582 mRNA downstream 8745 25347445 ~ 25349142 (-) True AMCG00016582
AMCG00016577 mRNA downstream 10450 25326868 ~ 25347437 (-) True AMCG00016577
AMCG00016580 mRNA downstream 32417 25318898 ~ 25325470 (-) True AMCG00016580
AMCG00016578 mRNA downstream 46749 25285129 ~ 25311138 (-) True AMCG00016578
AMCG00016592 mRNA upstream 2716 25363398 ~ 25367579 (-) True AMCG00016592
AMCG00016591 mRNA upstream 52892 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016590 mRNA upstream 60601 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016595 mRNA upstream 73152 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016596 mRNA upstream 78654 25439336 ~ 25449752 (-) True AMCG00016596
TU17858 other downstream 80409 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 274188 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 342544 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 346109 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 475789 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 392313 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 720821 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 795839 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 821062 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 821062 26181744 ~ 26184778 (-) True G14676

Expression Profile