RNA id: AMCG00016591


Basic Information

Item Value
RNA id AMCG00016591
length 2301
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00016591
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25413316 ~ 25420371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGGTGTTCATAGGCTATCAGATGAGAAGATGGAGACTCTGTTCTCTGCTCTCAGCACAGTGCAGACTCTGGCAGAGGTCCAGCTCGCTCTGGACAGCCTCACAGAGAGAGGTGCTGCCAGCCTCATCCATCTCATCCAAAACTGCGGCCAACTACAGGTCCTGAGaatCACTGTGAAGGGAAGGGATGACTCGTATATGTCAGCAACCCTGAGCACACCAGGCAGGCTGAAGGAGGATGTGTTGTTGGGATGTGAAGatgtaaatgtttctgaaattatTCTGCTCTGTGGAGGCCTTAGAGACAGCGGTGTCATTATAAAGGATTTGGAGTTGGAATGtcataatgtaaatgtttatgaaaaGATTCTGCTCTGCGGAGAACTGAGAGAGCGTGGGGTCATTGTAAAGGATTTGCAgGTGGTGGTTTGTCGGCTGCCAGATGAGAAGCTGGAGGATCTGTGCTTTGCCCTTAGCACACTGCAGGCTCTGTCAAAGGCAGAGCTCACTCTCAACAACCTCACAGAAAGATGTGCTACTAGCTTAATGCATCTCATCCAGAGCTGCGGCCGTCTACAGAAACtgagAGTCTCTTGTGGTTTGCTGCTCGAGCCAGGAATCAGAGTGCTACGTGAATCCCAGAGGCGTCCCGACTGCTCCCTCATCATTGACGGGTGGAGATGTAACAAGCCAAGTGACCAGTGCCTGGATTTGGAGCTGTGTAATCAGACCTGTAATTCACACGTGTGCCTGAAGATCTTAGGGACATCGTTCATAGAAGAGCCTTATGGGGGGGGCAAGGGATGCAGAAAGCAGCGTTACTTGTATACTAGTGAACCTGCTGCAGAGTAACAACAGCTTTAGTAACAAGGGATTTTCAAACAGATTGCAATATTCATAAAGTacttaaacacttattttgtaaaacatatttaagtgAAAGTGAATGATATTGGCAGTCATTAATGAATCGATAGAAACAGATGCCAAGCATTGTATGAATATGGTAGTTCCAGAACAAAATGCATTCCCTTTTGATGACATCAGGACTTCCCTGAGTGCCATCGGTAGTTGTTGCAATCTGGAGACATGGAATCTGGTGACCGCACAGCCAATACAGttgataaaatgtaatataaaaaagtaaaatattcaaaaatgaGGCAAAACTATATGGTCCGAAACTGGGGTCTGCGGTTGGCTGATTTATCAGATTCACATTCTCGACTCACTGCATCACAAGCTAAAGCTGCCCGAGCAGCACACATCGCATCGTTCACAGCTTGCCTTTGTGACACGGGACTAATGGACTGCCAtgattttcacatttgattcaaatgattaaattctttaatttcattacCGCATATTTACAATCTTTAATGGTCCTTCGGTTTGAACAGTAGTTGAGAAACACCTGaacatttataattacaatatacaacTACAGCTTAGTCCAAATTGGCATAATGCAGATGcaatatgacattttttttcaaaatattgagCAGAGTGgagtaatatatatttcagatgttcagttgtacttttttttttcttttacaatagTGATCCTCCAAGCTGTCATTAGTTTAggcttataaaaataaaatatgaatgttttacataagcctacctgagtaaataattatattaatcaagaaattgggagctcctgttgaaacaaaaaccaacagacactgtggccccccaggactggagtctggcACCCATTCCCTGGGGAAATTCCAAGGAAGCCCCATCCAATGACAGGCTCAAGCTGCTAGCAGATTTGGTTTCTAAATCCAGAACTAAAGAGACAAATGATTACAGGTGAATCctaaccttaaaaacaaaacaatattgcagTATGTCATTCCACCATCTTCTCTCAATTGGctcaacacaacaacaaaataaaccacaagaTACTTTTGACtggcaaatttaaaatgtaacattaccGTAAAAAGAAATCTGGCTTGTTTGATATCAAATGTAAGGTCATGCCTtaagggacttgaaaatgtaaatcaaagaACACTAAAACGACAATATAGAATAAGAAGGAAAGTCTGCGTAACATTTGTACCATTGTCTTATTCCTCGAAGCCATCACACCTCCAATAGACATTCTGCAGAAAgtaagggagaggaatggcaaggGCTTCGTCGATTGAAATCTCTTTGTCTGAAACATCAAAGCAGAAAGTAAAAACTACCAATTTGGAGCGAAACAACCTGGGATCGAAAACTTAGGAGTGGATGCATCCAAGGAAACAAGTCTCTGGAGCATCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17952 lncRNA downstream 8473 25404895 ~ 25405101 (-) True G14472
TU17860 lncRNA downstream 291199 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 402319 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 402319 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 402811 25008156 ~ 25010763 (-) False AMCG00016562
TU17979 lncRNA upstream 96618 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 96618 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 122675 25543046 ~ 25545725 (-) True G14496
TU18009 lncRNA upstream 184409 25604780 ~ 25609059 (-) True G14507
TU18019 lncRNA upstream 251933 25672304 ~ 25675200 (-) True G14517
AMCG00016592 mRNA downstream 45995 25363398 ~ 25367579 (-) True AMCG00016592
AMCG00016589 mRNA downstream 52892 25357887 ~ 25360682 (-) True AMCG00016589
AMCG00016593 mRNA downstream 56127 25353341 ~ 25357447 (-) True AMCG00016593
AMCG00016582 mRNA downstream 64432 25347445 ~ 25349142 (-) True AMCG00016582
AMCG00016577 mRNA downstream 66137 25326868 ~ 25347437 (-) True AMCG00016577
AMCG00016590 mRNA upstream 912 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016595 mRNA upstream 13463 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016596 mRNA upstream 18965 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016594 mRNA upstream 29538 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016597 mRNA upstream 191192 25611563 ~ 25642333 (-) True AMCG00016597
TU17858 other downstream 136096 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 329875 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 398231 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 401796 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 531476 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 332624 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 661132 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 736150 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 761373 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 761373 26181744 ~ 26184778 (-) True G14676

Expression Profile