RNA id: AMCG00016592


Basic Information

Item Value
RNA id AMCG00016592
length 2240
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00016592
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25363398 ~ 25367579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGTCCCCGCCAGTCTCGGGCAGAACGTCGTGAACTCTCGCGGTGTTTGGGCCGCAGCTTCAGAGCAGCATGGCGGCGGCGGCGATGCGGAGCTGCTGCAGGGGAGTCCTGCAGGCGGGCGGCCACGGCAGAGCTACTCCCCTGTGGCCCCGGCGCACCGGAGGTCAGTCCCGCTGAGTGTCGGCGACCTGTTCAACACGCTCTGAATGGCGAGGGCAGCCGTGGCGGATAATGAAGCGAGAGGTCGGGGGTGTGTCATCAGGGCGGCCGGAGAGATCTTCGTTTCCTTACATTGTCGTAAAACGGTCCGTCCGTCCGCAGTACCGCTGTCGTGAACGTGTTGACAGTGAAGACTAGCGGCCGGTCGTTTCTCTACGGGTCCCTCAGGTTGATCATTTACCAGCTTCAGCGAGCTCTTCTGTTGGTTTTATTGGAAGAAGATTTACTGAAGGGAGGATGGAAAACGTTGGGAAGCACAGGAGCTGGCTGAGGGAAGCAGGATTAAGACAGAAGTCATCAGTGCAGTATTTAAATCGCCCAGATCTTCCAAAGCTGGCCTACCAGAGAATTAAAGGCAAGAGCCCCGGCGTGGTGTTCCTGCCTGGCCTCGCCTCCAACATGAACGGGCAGAAGGCAGAGGCGCTGGAAGATTTCTGCAAATCTTTAGGTCATTCGTATTTAAGGTTTGATTACACGGGATGTGGGGCGTCGGAAGGTGTGTGGGAAGAGTGTACGCTCGGCACGTGGAAGAAGGATGTGCTGACCGTGCTGGACGAGCTCACAGAAGGACCACAGATCTTGGTGGGTTCTAGCATGGGCGGCTGGCTGATGCTCCTTGCCGCGATCGCTCGGCCGGAGAAGACCGCGGCTCTTATTGGCATCGCCAGTGCTACGGATCACTTCGTCACTGCTTTTAAATCCCTTCCTATAGAGGTGCGCAAAGAAACGGAAGAGAAAGGGGTGTGGAAGTTGGTGAGCAAGCACAGTGAGGAGGGCTTCTATAACATGCGCCTGGAGTTCATTAAGGAGGCGGAGAACCACTGCATGCTGCAGAGCCCCATTCCTGTCACCTGCCCTGTGCGGCTCATCCACGGCATGCAGGACCAGGACGTCCCCTGGCACGTCTCCATGCAGGTGGCCGAACGTGTACTGAGCACCGACGTGGACGTCGTCCTGCGCAAACACGGCACGCACCGCATGTCTGAGAAGGACGACCTCAAGCTGCTGGTCTACACTATCGACGACCTCATCGACAAGCTCACCACGCTGGCCTGAGCGGACTGGAGTCGACCTTCCTTCTCCTGGCTTCTCTTCTGGGCACTGTGAAGGCAGTTCATTGCCACGCTTATGCAATTAAAGAAAAGGGGATCACCAAAGTAAACAAAACTGTCCGAGAAGTaaaagacacacagacgcagagaaaagctttttttgaaCCTTCTATTCCATTTTGCCTTACAGatggagttttattttattttatttttgatagtAGTTAAATTGCAGTGTGTTTGTAGTCACACTAGGTTATGTAAAAGATGctgctatttttgtttctatgacagaacccccccccccgcatgTCCCGGAGCTATTTTTCCTACTGTTTTgtaccaacacacacacacacacacacaaatctataTTCATGTTCCTGTGCCTATTTTTATGACTTTGTTCCACAGAATTTGCCATGGTGTTTATgtatactttcaaataaacatggtATGTTGCCTGGAATGggtttcctttttctgttgtGATACGTGTGGGGTTACCATGGCTAGTACAGACTGCCAGTGCTCGAAGATCACCTCTTTAGATCCATTATTTATAGGGtatatctttgttttattgacCTTGCAGAACTGTTTATATATCCGGTGTGTATCTTTGATAATTTATGATTTGTTCTCCAGTACTGTCTGCCGGCTTGCTCAGCCCTCAGAGACTGTGCATCTCAGTGCCAGAGACAACAAACTCATATCATCAATATGCCATTAGAGGGCAGCAaatatcaaggaaattataatggTCAACTCACCTGCAATTACTAGCTGATTGACTTTCTGCCAAGTTTCTCCTCAAGGTTTGAAGTATACAGGAATTGACTCCTTCTATGTCTACCTTATTGGTCTGTTGGCACCTGGAGCCGACACATTTCCTGTGACAGCACAATGTCAGTTCTCACCGTTGCCATAGATTTATGCATGAATTGCaagaaccattttttttttt

Function

GO: NA

KEGG:

id description
K13702 ABHD10; abhydrolase domain-containing protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 241023 25122090 ~ 25122375 (-) True G14400
TU17761 lncRNA downstream 352143 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA downstream 352143 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA downstream 352635 25008156 ~ 25010763 (-) False AMCG00016562
TU17733 lncRNA downstream 456852 24905121 ~ 24906546 (-) True G14311
TU17952 lncRNA upstream 37316 25404895 ~ 25405101 (-) True G14472
TU17955 lncRNA upstream 45737 25413316 ~ 25414098 (-) False AMCG00016591
TU17979 lncRNA upstream 149410 25516989 ~ 25520096 (-) True G14487
TU17984 lncRNA upstream 149410 25516989 ~ 25520096 (-) False G14487
TU17998 lncRNA upstream 175467 25543046 ~ 25545725 (-) True G14496
AMCG00016589 mRNA downstream 2716 25357887 ~ 25360682 (-) True AMCG00016589
AMCG00016593 mRNA downstream 5951 25353341 ~ 25357447 (-) True AMCG00016593
AMCG00016582 mRNA downstream 14256 25347445 ~ 25349142 (-) True AMCG00016582
AMCG00016577 mRNA downstream 15961 25326868 ~ 25347437 (-) True AMCG00016577
AMCG00016580 mRNA downstream 37928 25318898 ~ 25325470 (-) True AMCG00016580
AMCG00016591 mRNA upstream 45995 25413574 ~ 25420371 (-) True AMCG00016591
AMCG00016590 mRNA upstream 53704 25421283 ~ 25423659 (-) True AMCG00016590
AMCG00016595 mRNA upstream 66255 25433834 ~ 25438775 (-) True AMCG00016595
AMCG00016596 mRNA upstream 71757 25439336 ~ 25449752 (-) True AMCG00016596
AMCG00016594 mRNA upstream 82330 25449909 ~ 25483710 (-) True AMCG00016594
TU17858 other downstream 85920 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 279699 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 348055 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 351620 25011341 ~ 25011778 (-) False AMCG00016562
TU17725 other downstream 481300 24881148 ~ 24882098 (-) True G14305
TU18038 other upstream 385416 25752995 ~ 25754472 (-) True G14534
TU18183 other upstream 713924 26081503 ~ 26083167 (-) True G14637
TU18222 other upstream 788942 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 814165 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 814165 26181744 ~ 26184778 (-) True G14676

Expression Profile